View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1524R-Insertion-2 (Length: 1020)
Name: NF1524R-Insertion-2
Description: NF1524R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1524R-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 75 - 759
Target Start/End: Complemental strand, 51527901 - 51527211
Alignment:
| Q |
75 |
cagttattataactggaaa---gatagagaaaacatgcttaccggttctcttgattcttccatcatcatccacttcctcatttgtgtactgtctgataga |
171 |
Q |
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| T |
51527901 |
cagttattataactggaaattagatagagaaaacatgcttaccggttctcttgattcttccatcatcatccacttcctcatttgtgtactgtttgataga |
51527802 |
T |
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| Q |
172 |
cgcatccttttcagcctccatttagatacagattcagattcccactctcaaattaattaactcacaaaccctgtcaagaattagagcttaagcatcaaaa |
271 |
Q |
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| T |
51527801 |
cacatccttttcagcctccatttatatacagattcagattcccactctcaaattaattaactcacaaaccctgtcaagaattagagcttaagcatcaaaa |
51527702 |
T |
|
| Q |
272 |
acaaaattgagnnnnnnnn-catcacatataaatttattaactctctaataagcacaaggaataatattgatgttgcatcattacaatatttattcacca |
370 |
Q |
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| T |
51527701 |
acaaaattgagaaaaaaaaacatcacatataaatttattaactctctaataagcacaaggaataatattgatgttgcatcattacaatatttattcacca |
51527602 |
T |
|
| Q |
371 |
ttggattaaggtgccctctaaggtgcgcaaccttatcagattgcgtaatgaacacgtttcaaaccagaaagccaaacagacaaatatcgtgtctaagtat |
470 |
Q |
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| T |
51527601 |
ttggattaaggtgccctctaaggtgcgcaaccttatcagattgcgtaatgaacatgtttcaaaccagaaagccaaacagacaaatattttgtctaagtat |
51527502 |
T |
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| Q |
471 |
ttctagtccaaacaactctatgaaaacaaaatgtaccgtagcagcaatatcgtgcgtcaccccctccttctttgtgaatgtgattcccttggagtgnnnn |
570 |
Q |
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| T |
51527501 |
ttctagtccaaacaactctatgaaaacaaaatgtaccgtagcagcaatatcgtacgtcaccccctccttctttgtgaatgtgattcccttggagtgtttt |
51527402 |
T |
|
| Q |
571 |
nnncttattttcttatcgactccttcattgtgtttcnnnnnnnngttgaaaaatcctctattgtggtttgttaggtgcagaatt--ttagactacatgtg |
668 |
Q |
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| T |
51527401 |
tttcttattttcttatcgactccttcattgtgtttcttttttttgttgaaaaatcctctattgtggtttgttaggtgcagaatttgttagactacatgtg |
51527302 |
T |
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| Q |
669 |
gtgcatacactccgtattatcacgaggtaagtacgtagtttatttataataatatttagataatttttgtcatgctagcttatctcagttg |
759 |
Q |
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| T |
51527301 |
gtgcatacactccgtattatcacgaggtaagtacatagtttatttataataatatttagataatttttgtcatgctagcttatctcagttg |
51527211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 858 - 1016
Target Start/End: Complemental strand, 51526674 - 51526518
Alignment:
| Q |
858 |
ttcactaccagatgaccgtaaagaaaaacactattggcacgattggaatttgggataggaagagat-accagttttttattggtataaaccg-aacagtg |
955 |
Q |
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| T |
51526674 |
ttcaccaccacatgactgtaaagaaaa-cactattggcacgattggaattt-ggacaggaagagatgaccagttttttatt-gtattaaccgaaacagtg |
51526578 |
T |
|
| Q |
956 |
ttacgtgtcatttcaga-ttcatctattccagtgccatgtgagaag-acattagtatgaaaaa |
1016 |
Q |
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|||||||||| |||||| |||||||||| ||||| | ||||||||| |||||||||||||||| |
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| T |
51526577 |
ttacgtgtca-ttcagatttcatctatt-cagtg-cgtgtgagaagaacattagtatgaaaaa |
51526518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 784 - 818
Target Start/End: Original strand, 51526751 - 51526785
Alignment:
| Q |
784 |
ttttaaaattattaacattttatttcttatcatac |
818 |
Q |
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| T |
51526751 |
ttttaaaattattaacattttatttcttatcatac |
51526785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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