View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1524R-Insertion-8 (Length: 387)
Name: NF1524R-Insertion-8
Description: NF1524R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1524R-Insertion-8 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 9877282 - 9876903
Alignment:
| Q |
8 |
aaaaaatgcattaagagaaggttaagtaagggttaactaggtggttaatataattaactaatcagctgaattgaaagatttagctatggattttctttgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9877282 |
aaaaaatgcattaagagaaggttaagtaagggttaactaggtggttaatataattaactaatcagctgaattgaaagatttagctatggattttctttgt |
9877183 |
T |
|
| Q |
108 |
accttgatattttggtacacatcttgtctcaaaacagccattgttgggccaattttttctgtgtacacatagtaacaatgtgttaatacgaatgtttaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9877182 |
accttgatattttggtacacatcttgtctcaaaacagccattgttgggccaattttttctgtgtacacatagtaacaatgtgttaatacaaatgtttaaa |
9877083 |
T |
|
| Q |
208 |
cacacatcaaaccttgaatataattaaagatttgaagtaagaaagttaacctaccaagaacatgcagaactgaataacatatagagagaaaaggcttggt |
307 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9877082 |
cactcatcaaaccttgaatataattaaagatttgaattaagaaagttaacctaccaagaacatgcagaactgaataacatatagagagaaaaggcttagt |
9876983 |
T |
|
| Q |
308 |
gggtatatgagcagcttcatggttttcttcagttggtttaactattaccaccatagaaatttcttcaataaaacaactta |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9876982 |
gggtatatgagcagcttcatggttttcttcagttggtttaactattaccaccatagaaagttcttcaataaaacaactta |
9876903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 9871603 - 9871489
Alignment:
| Q |
56 |
tataattaactaatcagctgaattgaaagattt-agctatggattttctttgtaccttgatattttggtacacatcttgtctcaaaacagccattgttgg |
154 |
Q |
| |
|
|||||| || |||| ||||||||||||| ||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9871603 |
tataatcaagtaataagctgaattgaaattttttagctacggattttctttgtaccttgatattttgatacacatcttgtctcaaaacagccattgttgg |
9871504 |
T |
|
| Q |
155 |
gccaattttttctgt |
169 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
9871503 |
ccctattttatctgt |
9871489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 387
Target Start/End: Complemental strand, 9871385 - 9871257
Alignment:
| Q |
259 |
taccaagaacatgcagaactgaataacatatagagagaaaaggcttggtgggtatatgagcagcttcatggttttcttcagttggtttaactattaccac |
358 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||| |||||||| | || || |||||||||||| | |||||| ||| ||||||||||| || | |
|
|
| T |
9871385 |
taccaagaacttgtagaaccaaataacatatagagaggaaaggcttaatagggatgtgagcagcttcaagattttctccagaaggtttaactatcacaat |
9871286 |
T |
|
| Q |
359 |
catagaaatttcttcaataaaacaactta |
387 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
9871285 |
catagaaagctcttcaataaaacaactta |
9871257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University