View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1524R-Insertion-9 (Length: 284)
Name: NF1524R-Insertion-9
Description: NF1524R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1524R-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 31737377 - 31737190
Alignment:
| Q |
8 |
attccatgctaatgaggtactaccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcct |
107 |
Q |
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| T |
31737377 |
attccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcct |
31737278 |
T |
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| Q |
108 |
atatctttgcttggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaattcgattatacaaatta |
195 |
Q |
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| T |
31737277 |
atatctttgattggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaattcgattatacaaatta |
31737190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 13852306 - 13852397
Alignment:
| Q |
12 |
catgctaatgaggtactaccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcg |
103 |
Q |
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| T |
13852306 |
catgctaatgaggtgctaccaaagtccatgttggcgtattttgttgctttaattccaaaagtgtcttcacctttggagttgaaggattatcg |
13852397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 8247214 - 8247039
Alignment:
| Q |
12 |
catgctaatgaggtactaccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatat |
111 |
Q |
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| T |
8247214 |
catgctaatgagattatatcaaaaggaatgttggtgtattttgttgcattgatatcgaaagtttcatctccaatggctatgaaggattaccgctctattt |
8247115 |
T |
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| Q |
112 |
ctttgcttggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaattcgattat |
187 |
Q |
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| T |
8247114 |
cattgctaggtagtttatacaaattactcgccaaagttttaacaaggcgtttggcgggaattatgaattctattat |
8247039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 14457238 - 14457274
Alignment:
| Q |
40 |
tgttagcttattttgttgctttgattccaaaagtttc |
76 |
Q |
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| T |
14457238 |
tgttggcttattttgtggctttgattccaaaagtttc |
14457274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 12829326 - 12829238
Alignment:
| Q |
30 |
ccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgct |
118 |
Q |
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| T |
12829326 |
ccaaaaggtttgttagcgtattttgttgctttgattccggaagtttcatctcctagggctttgaaggattaccaccctatttctttgct |
12829238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 40388063 - 40387947
Alignment:
| Q |
39 |
atgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattac |
138 |
Q |
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| T |
40388063 |
atgttggctttttttgtgactttgattcccaaagtgtcatcttcgatggatttgaaggattttaggccaatattcttgctaggatgcttatataaattac |
40387964 |
T |
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| Q |
139 |
ttgccaaggttctagca |
155 |
Q |
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| T |
40387963 |
tagccaaggttttagca |
40387947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 40197959 - 40197872
Alignment:
| Q |
36 |
gggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggtt |
123 |
Q |
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| T |
40197959 |
gggatgttggcttattttgttgcgttaattcctaaagttttgtcccctatggctttgagggattttcaaccgatttctttgcttggtt |
40197872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 4901744 - 4901850
Alignment:
| Q |
15 |
gctaatgaggtactaccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctt |
114 |
Q |
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| T |
4901744 |
gctaatgaggttttaccgaagagtatgttagcttactttgtagctttaattccaaagatttcttcccctttggcttttaaggattttcgtcccatttctt |
4901843 |
T |
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| Q |
115 |
tgcttgg |
121 |
Q |
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| T |
4901844 |
tgcttgg |
4901850 |
T |
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