View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1524_high_1 (Length: 580)
Name: NF1524_high_1
Description: NF1524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1524_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 16 - 563
Target Start/End: Complemental strand, 4997224 - 4996675
Alignment:
| Q |
16 |
gaaatgaaggtgggagcagggtagcatggaatgtgaggaaatagcattaccaagaaaattggtagcaagtgaaagattttggagtgttggaatatgacag |
115 |
Q |
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| T |
4997224 |
gaaatgaaggtgggagcagggtagcatggaatgtgaggaaatagcattaccaagaaaattcgtagcaagtgaaagattttggagtgttggaatatgacag |
4997125 |
T |
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| Q |
116 |
aaattagatggaaaatcaccataaataccggtttctgtgaggtcgattgatacaacggatttattccacgaatcgcaggttatgcctctccagttacaag |
215 |
Q |
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| T |
4997124 |
aaattagatggaaaatcaccataaataccggtttctgtgaggtcgattgatacaacggatttattccgcgaatcgcaggttatgcctctccagttacaag |
4997025 |
T |
|
| Q |
216 |
gattatgatctgtgtttggaagccaatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagag |
315 |
Q |
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| T |
4997024 |
gattatgatctgtgtttggaagccaatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagag |
4996925 |
T |
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| Q |
316 |
tgaaaaggtggttccatttgaacatagtagtgaaaagagaagaatgaaaatgagttttttcatgttgtgaat--ttttggtagtgtgtgtgagaggatga |
413 |
Q |
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| T |
4996924 |
tgaaaaggtggttccatttgaacatactagtgaaaagagaagaatgaaaatgagttttttcatgttgtgaatttttttggtagtgtgtgtgagaggatga |
4996825 |
T |
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| Q |
414 |
gaatgatcatg-ttttttgaaggggtgttaattttgtatttgtatagttgaagatgctgaagtttggtagtatgcgtcacacacttcttagtgattttcc |
512 |
Q |
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| T |
4996824 |
gaatgatcgtgtttttttgaaggggtgttaa-tttgtatttgtatagttgaagatgctaaagtttggtagtatgagtcacacacttcttagtgattttcc |
4996726 |
T |
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| Q |
513 |
tcgtgaataagtagaagctcctcttattcatgcatgaagatagagacagtt |
563 |
Q |
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| T |
4996725 |
tcgtgaataagtagaagctcctcttattcatgcatgaagatagagacagtt |
4996675 |
T |
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