View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1524_low_1 (Length: 587)
Name: NF1524_low_1
Description: NF1524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1524_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 17 - 568
Target Start/End: Complemental strand, 34017154 - 34016603
Alignment:
| Q |
17 |
acgtacttctcgccggttatcttccgtttgacgatttgaatattccggcgatgtgtaagaagatttcccggcgagattaccggtttccggattggatttc |
116 |
Q |
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| T |
34017154 |
acgtacttctcgccggttatcttccgtttgacgatttgaatattccggcgatgtgtaagaagatttcccggcgagattatcggtttccggattgggtttc |
34017055 |
T |
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| Q |
117 |
caaacgggcgcgtattgtgatatatagattacttgacccgaacccggaaacacgaatgagtttggagggtttatttggcaatgaatggtttaagaaatcg |
216 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34017054 |
gaaacgtgcgcgtattgtgatatataggttacttgacccgaacccggaaacgcgaatgagtttggagggtttatttggcaatgaatggtttaagaaatcg |
34016955 |
T |
|
| Q |
217 |
ttgaaacccgaagctgaaccggaaaagagtatattcgggtgtgattatgggaaggaagggaaaaatttaggtttgaatgcgtttcatataatatctatgt |
316 |
Q |
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| T |
34016954 |
ttaaaacccgaagctgaaccggaaaagagtatattcgggtgtgattatgggaaggaagggaaaaatttaggtttgaatgcgtttcatataatatctatgt |
34016855 |
T |
|
| Q |
317 |
cttcgggtttggatttgagtggtttatttgaaacgacgtcgtcttctcaaggtggtaataataataatacatggagggagaagaggtttacttcaagtgc |
416 |
Q |
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| T |
34016854 |
cttcgggtttggatttgagtggtttatttgaaacgacgtcgtcttctcaaggtggtaataataataatacatggagggagaagaggtttacttctagtgc |
34016755 |
T |
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| Q |
417 |
aaagattgaatgtgtggaggaaaaggtgaaggaagtgggaggggttttggggtttaaagttgaggttgggaagaacagtgaaattggattggtgaaaggg |
516 |
Q |
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||| |||||| |||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
34016754 |
aaacattgaagtggtgggggaaaaggtgaaggaagtgggaggagttttggggtttaaggttgaggttgggaagaatagtgcaattggattggtgaaaggg |
34016655 |
T |
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| Q |
517 |
aagatgggtttggtagttgaagtttttgagattgtaccgtgtcaacttgttt |
568 |
Q |
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||| ||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
34016654 |
aaggtgggtttggtagttgaagtttttgagattgtgccttgtcaacttgttt |
34016603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 15171707 - 15171596
Alignment:
| Q |
17 |
acgtacttctcgccggttatcttccgtttgacgatttgaatattccggcgatgtgtaagaagatttcccggcgagattaccggtttccggattggatttc |
116 |
Q |
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|||| |||||||||||| |||||||||| || |||| ||||||||||||||||||||||| || | || || ||||| | ||||||||| |||||||| |
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| T |
15171707 |
acgttcttctcgccggtcatcttccgttcgatgattcgaatattccggcgatgtgtaagagaataactcgccgggattatcagtttccggaatggatttc |
15171608 |
T |
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| Q |
117 |
caaacgggcgcg |
128 |
Q |
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|||| |||||| |
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| T |
15171607 |
gaaaccggcgcg |
15171596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 15171431 - 15171367
Alignment:
| Q |
290 |
tgaatgcgtttcatataatatctatgtcttcgggtttggatttgagtggtttatttgaaacgacg |
354 |
Q |
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||||||||||| |||||||||| |||| ||||||||| ||||||||||||| |||||||||||| |
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| T |
15171431 |
tgaatgcgtttgatataatatcgttgtcgtcgggtttgaatttgagtggtttgtttgaaacgacg |
15171367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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