View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1524_low_3 (Length: 526)

Name: NF1524_low_3
Description: NF1524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1524_low_3
NF1524_low_3
[»] chr5 (10 HSPs)
chr5 (223-506)||(15187946-15188225)
chr5 (56-136)||(15188238-15188318)
chr5 (270-418)||(19215349-19215500)
chr5 (54-136)||(36868563-36868645)
chr5 (54-103)||(788022-788071)
chr5 (338-418)||(788345-788428)
chr5 (54-106)||(19215708-19215760)
chr5 (310-418)||(36868259-36868370)
chr5 (54-129)||(32278451-32278525)
chr5 (460-500)||(19215250-19215289)
[»] chr1 (14 HSPs)
chr1 (54-463)||(19393908-19394325)
chr1 (56-364)||(39332358-39332677)
chr1 (297-445)||(17114743-17114894)
chr1 (54-122)||(3374558-3374626)
chr1 (54-136)||(41034786-41034868)
chr1 (308-432)||(41035065-41035192)
chr1 (54-140)||(17114466-17114551)
chr1 (287-503)||(49491899-49492120)
chr1 (54-142)||(29061290-29061376)
chr1 (311-418)||(50903525-50903635)
chr1 (316-414)||(13062010-13062111)
chr1 (64-129)||(44163512-44163576)
chr1 (310-380)||(3374311-3374381)
chr1 (455-500)||(17114952-17114997)
[»] chr7 (5 HSPs)
chr7 (54-464)||(33191200-33191626)
chr7 (54-129)||(19407635-19407710)
chr7 (57-129)||(7543850-7543922)
chr7 (297-385)||(19407872-19407960)
chr7 (54-106)||(39498220-39498272)
[»] chr8 (16 HSPs)
chr8 (310-436)||(8831264-8831393)
chr8 (310-432)||(27786829-27786954)
chr8 (310-432)||(36206462-36206587)
chr8 (54-103)||(3072281-3072330)
chr8 (54-106)||(399511-399563)
chr8 (54-103)||(8831017-8831066)
chr8 (310-418)||(29369070-29369181)
chr8 (54-139)||(29369370-29369455)
chr8 (54-100)||(14295245-14295291)
chr8 (54-136)||(27786554-27786636)
chr8 (340-436)||(399792-399891)
chr8 (322-416)||(28225767-28225864)
chr8 (455-500)||(27787010-27787055)
chr8 (56-105)||(36206249-36206298)
chr8 (455-500)||(8831460-8831505)
chr8 (54-106)||(3801292-3801344)
[»] chr4 (13 HSPs)
chr4 (310-436)||(24239885-24240011)
chr4 (310-416)||(16593811-16593920)
chr4 (297-418)||(37049967-37050092)
chr4 (54-106)||(19852785-19852836)
chr4 (310-416)||(19852453-19852562)
chr4 (54-129)||(37050306-37050380)
chr4 (54-106)||(16593537-16593588)
chr4 (54-113)||(18522040-18522099)
chr4 (455-500)||(37049876-37049921)
chr4 (54-105)||(7500378-7500429)
chr4 (317-435)||(16832189-16832310)
chr4 (54-139)||(7492293-7492378)
chr4 (455-500)||(19852321-19852366)
[»] chr6 (10 HSPs)
chr6 (287-443)||(4263388-4263544)
chr6 (310-436)||(10989973-10990102)
chr6 (297-418)||(25167810-25167934)
chr6 (54-129)||(3949640-3949714)
chr6 (55-129)||(25168148-25168221)
chr6 (54-129)||(2606611-2606685)
chr6 (54-136)||(10990286-10990368)
chr6 (455-500)||(25167719-25167764)
chr6 (54-106)||(13535386-13535437)
chr6 (455-500)||(29708952-29708997)
[»] chr3 (17 HSPs)
chr3 (287-442)||(21844910-21845068)
chr3 (310-429)||(16893033-16893155)
chr3 (54-106)||(18028331-18028383)
chr3 (310-428)||(51524824-51524945)
chr3 (57-129)||(29347102-29347174)
chr3 (310-416)||(31067144-31067254)
chr3 (57-139)||(51525125-51525207)
chr3 (54-111)||(3367243-3367300)
chr3 (310-418)||(35526603-35526718)
chr3 (372-436)||(26796927-26796991)
chr3 (54-105)||(21844701-21844752)
chr3 (54-116)||(26796582-26796643)
chr3 (455-500)||(51524719-51524764)
chr3 (54-106)||(35526303-35526354)
chr3 (310-385)||(29346801-29346876)
chr3 (454-500)||(21845202-21845247)
chr3 (372-414)||(29346763-29346805)
[»] chr2 (12 HSPs)
chr2 (310-461)||(18693028-18693179)
chr2 (54-106)||(18811481-18811533)
chr2 (270-424)||(14296260-14296417)
chr2 (54-106)||(13502884-13502936)
chr2 (310-428)||(18811747-18811868)
chr2 (297-418)||(31092283-31092407)
chr2 (54-136)||(30180089-30180171)
chr2 (455-500)||(37344486-37344531)
chr2 (310-418)||(37344586-37344697)
chr2 (310-414)||(13502653-13502760)
chr2 (54-103)||(31092619-31092668)
chr2 (54-103)||(45513477-45513526)
[»] scaffold0531 (2 HSPs)
scaffold0531 (310-436)||(10208-10337)
scaffold0531 (54-106)||(10560-10611)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 223 - 506
Target Start/End: Complemental strand, 15188225 - 15187946
Alignment:
Q  223 tgaaaaattgtacacaataatttacatttctatctattattataattcaactataatgtagctaccaagtcaattttgaaggtagctttttgggcacggg 322  Q
    |||||||||||||||||||||| ||||||||| ||||| |   ||| ||||||| |||||||||||||||||||||| | ||||||  ||||||||||||    
T  15188225 tgaaaaattgtacacaataattgacatttctagctattct---aatgcaactattatgtagctaccaagtcaattttaatggtagccatttgggcacggg 15188129  T
Q  323 tcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttcttctttttctctgcattagtgctctcatatagacttggatagtactg 422  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  15188128 tcctcattctagctgagttaaagctatcaggcttcactttgctcatatgcttcttctttttctctgcattagtgctctcatataggcttggatagtgctg 15188029  T
Q  423 ctcaaagtctgatacaatggctttagtgttgtcctcttctacctcatcgcctcaaaatttggaaagaatttgcacacttttctg 506  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||    
T  15188028 ctcaaagtctgatataatggcttcagtgttgtcctcttctacctcatc-ccccaaaatttgcaaagaatctgcacacttttctg 15187946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 15188318 - 15188238
Alignment:
Q  56 caaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaagagaaaa 136  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  15188318 caaagcactaaaatataaaagacaagagatgcctgaacgaatacaacagagtcacatagtgaagaacctatgaagagaaaa 15188238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 270 - 418
Target Start/End: Complemental strand, 19215500 - 19215349
Alignment:
Q  270 caactataatgtagctaccaagtcaattttgaaggtagctttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcata 369  Q
    |||||||  |||| || ||||| || ||||||||||| | |||||||| |||||||||||||  ||| ||||||||||||  ||| |||||||| |||      
T  19215500 caactattctgtatctgccaaggcagttttgaaggtacccttttgggctcgggtcctcattcgggctgagttaaagctagacggcatcactttgttcacc 19215401  T
Q  370 tgcttcttct---ttttctctgcattagtgctctcatatagacttggatagt 418  Q
    ||||||||||   || ||||||  |||||||||||| |||| ||||||||||    
T  19215400 tgcttcttcttcattctctctgtcttagtgctctcaaataggcttggatagt 19215349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 36868645 - 36868563
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaagagaaaa 136  Q
    |||||| ||||||||||||||||| | |||| |||||||||||||||||| || ||||  ||| |  ||||||||| ||||||    
T  36868645 atcaaaacactaaaatataaaagataggagaggcctgaaccaatacaacacagtcacaatgtgtaagacctatgaaaagaaaa 36868563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 788022 - 788071
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaaca 103  Q
    |||||| || |||||||||||||||| |||| ||||||||||||||||||    
T  788022 atcaaaacaataaaatataaaagacaggagaagcctgaaccaatacaaca 788071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 338 - 418
Target Start/End: Original strand, 788345 - 788428
Alignment:
Q  338 agttaaagctagcaggcttcactttgctcatatgcttcttcttttt---ctctgcattagtgctctcatatagacttggatagt 418  Q
    |||||||| ||| |||||||| |||| |||| ||||||||||| ||   |||||| ||| |||||||| |||||||||||||||    
T  788345 agttaaagttagaaggcttcattttgttcatctgcttcttcttctttctctctgccttaatgctctcaaatagacttggatagt 788428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 19215760 - 19215708
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagag 106  Q
    ||||||| | |||||||||||||| | |||| |||||||||||||||||||||    
T  19215760 atcaaagtaataaaatataaaagataggagaggcctgaaccaatacaacagag 19215708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 418
Target Start/End: Complemental strand, 36868370 - 36868259
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttcttctt-tttctctgca--ttagtgctctcatata 406  Q
    |||||| |||||| ||||||||  ||| |||||||||||| ||||||||||||  |||  ||||||||||| ||||||| ||  ||| |||||||| ||     
T  36868370 ttttggacacgggccctcattccggctgagttaaagctagaaggcttcactttattcacttgcttcttcttctttctctccaccttattgctctcagatt 36868271  T
Q  407 gacttggatagt 418  Q
     |||||||||||    
T  36868270 aacttggatagt 36868259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 32278451 - 32278525
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaa 129  Q
    ||||| ||| ||||||||||||| ||  ||| ||||||||||||||| ||||| ||||||||| | ||||||||||    
T  32278451 atcaaggcaataaaatataaaag-cagaagaggcctgaaccaatacatcagagtcacatagtgtaaaacctatgaa 32278525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 500
Target Start/End: Complemental strand, 19215289 - 19215250
Alignment:
Q  460 tctacctcatcgcctcaaaatttggaaagaatttgcacact 500  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  19215289 tctacctcatc-cctcaaaatttgaaaagaatttgcacact 19215250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 6e-63; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 54 - 463
Target Start/End: Original strand, 19393908 - 19394325
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaagagaaaatccaaa-------ctag 146  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||  ||| ||||| ||| |||||||||| | ||| |||| | |       ||||    
T  19393908 atcaaagcactaaaatataaaagacaggagatgtctgaaccaatacaa--gagtcacattgtggagaacctatggaaagagaatctagatctatccctag 19394005  T
Q  147 aaaagtaaggtcctaaaaaactatgcagtctatgaccatttaagccataacaactgctataatacaactc-tccctatgaaaaattgtacacaataattt 245  Q
    ||| | ||| ||||||||||||| ||||| ||||||||| |  |||||||||| ||||| || || || | ||||||||||||||| || | ||||| |     
T  19394006 aaagggaagatcctaaaaaactaggcagtttatgaccatatt-gccataacaattgctacaagactacccctccctatgaaaaattatataaaataaatg 19394104  T
Q  246 acatttctatctattattataattcaac----tataatgtagctaccaagtcaattttgaaggtagctttttgggcacgggtcctcattctagctaagtt 341  Q
    ||||| ||| ||||| |   | | ||||    |||   |||||| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||    
T  19394105 acatt-ctagctattct---attgcaaccggttattccgtagctgccaagtcaattttgaaggtacccttttgggcacgggtcctcattccagctaagtt 19394200  T
Q  342 aaagctagcaggcttcactttgctcatatg---cttcttctttttctctgcattagtgctctcatatagacttggatagtactgctcaaagtctgataca 438  Q
    ||||| || ||||||||||||||||| |||   |||||||||||||||||| |||||||||||  |||| |||||||||| |||||||||||||||||||    
T  19394201 aaagcaagaaggcttcactttgctcacatgcttcttcttctttttctctgctttagtgctctccgataggcttggatagtgctgctcaaagtctgataca 19394300  T
Q  439 atggctttagtgttgtcctcttcta 463  Q
    ||||||| |  ||||||||||||||    
T  19394301 atggcttcatcgttgtcctcttcta 19394325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 56 - 364
Target Start/End: Complemental strand, 39332677 - 39332358
Alignment:
Q  56 caaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaagagaaaatccaaa-------ctagaa 148  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||| | ||| |||||| |||||||||| |       |||||     
T  39332677 caaagcactaaaatataaaagacaggagatgcctgaatcaatacaacagagtcatatagtggataacttatgaaaagaaaatccagatctatctctagat 39332578  T
Q  149 aagtaaggtcctaaaaaactatgcagtctatgaccatttaagccataacaactgctataatacaactctccctatgaaaaattgtacacaataatttaca 248  Q
    | | ||| ||||||||||||| ||||| ||||||||| | | ||||| ||||||||| || || || || ||||||||||| | |||  ||||| | |||    
T  39332577 aggaaagatcctaaaaaactaggcagtttatgaccatatta-ccataccaactgctacaagactaccct-cctatgaaaaaatataccaaataaatgaca 39332480  T
Q  249 tttctatctat--tattataat----tcaactataatgtagctaccaagtcaattttgaaggtagctttttgggcacgggtcctcattctagctaagtta 342  Q
    |||||| ||||  ||||  |||     ||| |||  ||||||| |||||||| ||||||||||| | |||||||||||||||||||||   ||| |||||    
T  39332479 tttctagctattctattgcaataaaaccaattattctgtagctgccaagtcatttttgaaggtacccttttgggcacgggtcctcatttcggctgagtta 39332380  T
Q  343 aagctagcaggcttcactttgc 364  Q
    |||| |||||||||||||||||    
T  39332379 aagcaagcaggcttcactttgc 39332358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 297 - 445
Target Start/End: Original strand, 17114743 - 17114894
Alignment:
Q  297 tttgaaggtagctttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatg---cttcttctttttctctgcatta 393  Q
    |||| ||||| | |||||| || ||||||||||||| ||  |||||||||||||||||||||||||| ||| |||   |||||||||| ||||||  |||    
T  17114743 tttggaggtacccttttggacatgggtcctcattctggcagagttaaagctagcaggcttcactttgttcacatgtttcttcttctttctctctgtctta 17114842  T
Q  394 gtgctctcatatagacttggatagtactgctcaaagtctgatacaatggctt 445  Q
    ||||||||| ||||||||| |||||  || |||||||||||||  |||||||    
T  17114843 gtgctctcagatagacttgcatagtgttggtcaaagtctgatatgatggctt 17114894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 3374626 - 3374558
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaac 122  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||| || ||||||||| |||||    
T  3374626 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaaggcacatagtggagaac 3374558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 41034786 - 41034868
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaagagaaaa 136  Q
    |||||||||||||||||||||||||| |||| | ||||||||||||| ||||| ||||  ||||| |||||||||| ||||||    
T  41034786 atcaaagcactaaaatataaaagacaggagaggtctgaaccaatacaccagagtcacaatgtgaaaaacctatgaaaagaaaa 41034868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 308 - 432
Target Start/End: Original strand, 41035065 - 41035192
Alignment:
Q  308 ctttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttc---ttctttttctctgcattagtgctctcata 404  Q
    ||||||||||||||||||||||||  ||| |||||||||||| ||||||||   |  |||  ||||||   |||||||||||||| ||| |||||||| |    
T  41035065 ctttttgggcacgggtcctcattccggctgagttaaagctagaaggcttcaaaatattcacctgcttcttcttctttttctctgccttattgctctcaga 41035164  T
Q  405 tagacttggatagtactgctcaaagtct 432  Q
    ||||||||||||||  || |||||||||    
T  41035165 tagacttggatagtgttgttcaaagtct 41035192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 17114466 - 17114551
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaagagaaaatcca 140  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||| |||| | ||  | |||||||||||||||    
T  17114466 atcaaagcactaaaatataaaaga-aagagatgcttgaaccaatacaatagagcgacaaagtggataatttgtgaagagaaaatcca 17114551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 503
Target Start/End: Original strand, 49491899 - 49492120
Alignment:
Q  287 ccaagtcaattttgaaggtagctttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttctt---cttttt 383  Q
    ||||| ||| |||| ||||| | ||||||||||||||||||||||  ||| |||| ||||||| |||| |||||||| ||| |||||||||   |||| |    
T  49491899 ccaaggcaactttggaggtacccttttgggcacgggtcctcattccggctgagttgaagctagtaggc-tcactttgttcacatgcttcttctgctttct 49491997  T
Q  384 ctctgcattagtgctctcatatagacttggatagtactgctcaaagtctgatacaatggctttagtgttgtcctcttc---tacctcatcgcctcaaaat 480  Q
    | |||| |||||||||||  | |||||||||||||  ||||| |||  ||||   |||||||||   |||||||||||    || ||||| || ||||||    
T  49491998 ccctgccttagtgctctctaacagacttggatagtgttgctcgaagattgatgtgatggctttatcattgtcctcttccttaacttcatccccccaaaat 49492097  T
Q  481 ttggaaagaatttgcacactttt 503  Q
    ||||| ||||| | |||||||||    
T  49492098 ttggagagaatctacacactttt 49492120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 29061376 - 29061290
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaagagaaaatccaaa 142  Q
    ||||| |||||||||||||||||||| ||||| ||| ||||||| ||| ||||   ||||||| |||||||||||| ||||||||||||    
T  29061376 atcaatgcactaaaatataaaagacatgagatacctaaaccaatccaagagag--tcatagtggagaacctatgaaaagaaaatccaaa 29061290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 418
Target Start/End: Original strand, 50903525 - 50903635
Alignment:
Q  311 tttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttctt---ctttttctctgcattagtgctctcatatag 407  Q
    ||||||||||||||||||||   ||| |||| ||||||| ||||||||||||| |||  ||||||||   ||||  |||||| |||||||||||  | ||    
T  50903525 tttgggcacgggtcctcatttcggctgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttcactctgccttagtgctctctgacag 50903624  T
Q  408 acttggatagt 418  Q
    |||||||||||    
T  50903625 acttggatagt 50903635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 414
Target Start/End: Original strand, 13062010 - 13062111
Alignment:
Q  316 gcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttc---ttctttttctctgcattagtgctctcatatagacttg 412  Q
    |||||||||||||||   ||| |||||||||||  |||| |||||||| |||  ||||||   |||||||||||||  |||||||||||| |||||||||    
T  13062010 gcacgggtcctcatttcggctgagttaaagctaaaaggcatcactttgttcacctgcttcttcttctttttctctgtcttagtgctctcagatagacttg 13062109  T
Q  413 ga 414  Q
    ||    
T  13062110 ga 13062111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 44163512 - 44163576
Alignment:
Q  64 taaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaa 129  Q
    |||||||| |||| || |||| ||||||||||||||||||||| ||||||||| | ||||||||||    
T  44163512 taaaatattaaag-caggagaggcctgaaccaatacaacagagtcacatagtgtaaaacctatgaa 44163576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 3374381 - 3374311
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttcttctt 380  Q
    ||||||||||  ||||||||||  ||| ||||||| ||||| |||||||||||| |||  |||||||||||    
T  3374381 ttttgggcacatgtcctcattccggctgagttaaatctagccggcttcactttgttcacttgcttcttctt 3374311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 500
Target Start/End: Original strand, 17114952 - 17114997
Alignment:
Q  455 cctcttctacctcatcgcctcaaaatttggaaagaatttgcacact 500  Q
    |||||||||| ||||| |||||||||||||||||||| | ||||||    
T  17114952 cctcttctacttcatcccctcaaaatttggaaagaatctacacact 17114997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 54 - 464
Target Start/End: Complemental strand, 33191626 - 33191200
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaaca-gagccacatagtgaagaacctatgaagagaaaatccaaa-------cta 145  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| ||||| | | |||||||| ||| |||||| ||| |       |||    
T  33191626 atcaaagcacgaaaatataaaagacaagagatgcatgaaccaatacaacaagagtcacatcgcggagaacctaagaaaagaaaaaccagatctatcccta 33191527  T
Q  146 gaaaagtaaggtcctaaaaaa-ctatgcagtctatgaccatttaagccataacaactgctataatacaactctccctatgaaaaattgtacacaataatt 244  Q
    |||| | ||| |||||||||| ||| ||||| |||||||||  | |||||||||||||||| || || || |||||||||||||||| || | ||||| |    
T  33191526 gaaaggaaagatcctaaaaaaactaggcagtttatgaccata-atgccataacaactgctacaagactaccctccctatgaaaaattatataaaataaat 33191428  T
Q  245 tacatttctatctatt--attataattcaac----tataatgtagctaccaagtcaattttgaaggtagctttttgggcacgggtcctcattctagctaa 338  Q
     |||||||||  ||||  |||  |||  |||    |||   |||||| ||||||| |||||||||||| | || |||||||||||||||||   |||| |    
T  33191427 gacatttctagttattttattgcaataaaaccagttattccgtagctgccaagtctattttgaaggtacccttctgggcacgggtcctcatgtcagctga 33191328  T
Q  339 gttaaagctagcaggcttcactttgctcatatg---cttcttctttttctctgcattagtgctctcatatagacttggatagtactgctcaaagtctgat 435  Q
    ||||||||||||||||||||||||||||| |||   ||||||| |||||||||| ||||||||| |  ||||  ||||||||| ||||||||||||||||    
T  33191327 gttaaagctagcaggcttcactttgctcacatgtttcttcttcattttctctgctttagtgctccccgataggtttggatagtgctgctcaaagtctgat 33191228  T
Q  436 acaatggctttagtgttgtcctcttctac 464  Q
    | |||||||| |  |||||||||||||||    
T  33191227 a-aatggcttcatcgttgtcctcttctac 33191200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 19407635 - 19407710
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaa 129  Q
    ||||||| | |||||||||||||||| |||| |||||||||||||||||||||  |||||||| | ||||||||||    
T  19407635 atcaaagtaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagtgtaaaacctatgaa 19407710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 7543850 - 7543922
Alignment:
Q  57 aaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaa 129  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||||||  |||||| | | ||||||||||    
T  7543850 aaagcaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagagtaaaacctatgaa 7543922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 385
Target Start/End: Original strand, 19407872 - 19407960
Alignment:
Q  297 tttgaaggtagctttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttcttctttttct 385  Q
    |||| ||||| | ||||||||||||||||||||||  ||| |||||||||||| |||  |||||||| |||  ||||||||||| ||||    
T  19407872 tttggaggtacccttttgggcacgggtcctcattccggctgagttaaagctagaaggaatcactttgttcacctgcttcttcttcttct 19407960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 39498272 - 39498220
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagag 106  Q
    |||||| || ||||||||||||||||||||||| || || |||||||| ||||    
T  39498272 atcaaaacattaaaatataaaagacaagagatgtctaaatcaatacaagagag 39498220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 310 - 436
Target Start/End: Original strand, 8831264 - 8831393
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttcttctt---tttctctgcattagtgctctcatata 406  Q
    ||||| ||||||||||||||||  ||| ||||||||||||||||| |||||||| |||| |||||||||||   ||||||||| |||||||||||| |||    
T  8831264 ttttgagcacgggtcctcattccggctgagttaaagctagcaggcctcactttgttcatgtgcttcttcttctctttctctgccttagtgctctcagata 8831363  T
Q  407 gacttggatagtactgctcaaagtctgata 436  Q
    |||||||||| |  ||||||||||||||||    
T  8831364 gacttggataatgttgctcaaagtctgata 8831393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 310 - 432
Target Start/End: Original strand, 27786829 - 27786954
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgctt---cttctttttctctgcattagtgctctcatata 406  Q
    |||||||||||| |||||||||  ||| |||||||||||| ||||||||||||  |||| |||||   ||||||| |||| || ||| |||||||| |||    
T  27786829 ttttgggcacggctcctcattccggctgagttaaagctagaaggcttcactttattcatctgcttattcttctttctctccgccttattgctctcagata 27786928  T
Q  407 gacttggatagtactgctcaaagtct 432  Q
    |||||||||||| |||||||||||||    
T  27786929 gacttggatagtgctgctcaaagtct 27786954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 432
Target Start/End: Original strand, 36206462 - 36206587
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatg---cttcttctttttctctgcattagtgctctcatata 406  Q
    |||| |||||| ||||||||||   ||||||||||||||| ||||||||||||  |||| ||   |||||||||| ||||||| || ||||||||| |||    
T  36206462 ttttaggcacgagtcctcattccgactaagttaaagctagaaggcttcactttattcatttgcttcttcttctttctctctgccttggtgctctcagata 36206561  T
Q  407 gacttggatagtactgctcaaagtct 432  Q
    |||||||| |||  ||||||||||||    
T  36206562 gacttggaaagtgttgctcaaagtct 36206587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 3072281 - 3072330
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaaca 103  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3072281 atcaaagcactaaaatataaaagacaggagatgcctgaaccaatacaaca 3072330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 399511 - 399563
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagag 106  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  399511 atcaaatcactaaaatataaaagacaggagatgcctgaaccaatacaacagag 399563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 8831017 - 8831066
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaaca 103  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  8831017 atcaaagcactaaaatataaaagacaggagatgtctgaaccaatacaaca 8831066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 418
Target Start/End: Complemental strand, 29369181 - 29369070
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttct---tctttttctctgcattagtgctctcatata 406  Q
    ||||||||||||||||||||||| ||| |||||||||| | |||| |||||||  |||  |||||||   ||||| ||| ||  |||||||||||| |||    
T  29369181 ttttgggcacgggtcctcattctggctcagttaaagcttgaaggcatcactttattcacgtgcttcttcttctttatctttgtcttagtgctctcagata 29369082  T
Q  407 gacttggatagt 418  Q
    ||||||||||||    
T  29369081 gacttggatagt 29369070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 29369455 - 29369370
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaagagaaaatcc 139  Q
    ||||||||| |||||||||||||||| |||| ||||| |||||||||||||||  |||||| | | |||||||||| ||| |||||    
T  29369455 atcaaagcaataaaatataaaagacaggagaggcctggaccaatacaacagagatacatagagtaaaacctatgaaaagagaatcc 29369370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 14295245 - 14295291
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaataca 100  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||    
T  14295245 atcaaagcactaaaatataaaagacaggagaggcctgaaccaataca 14295291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 27786554 - 27786636
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaagagaaaa 136  Q
    |||||||||||||||||||||| ||| |||| |||||||||||||||||| || ||||  ||| |  ||||||||| ||||||    
T  27786554 atcaaagcactaaaatataaaatacaggagaggcctgaaccaatacaacaaagtcacaatgtgtaagacctatgaaaagaaaa 27786636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 436
Target Start/End: Original strand, 399792 - 399891
Alignment:
Q  340 ttaaagctagcaggcttcactttgctcatatg---cttcttctttttctctgcattagtgctctcatatagacttggatagtactgctcaaagtctgata 436  Q
    ||||||||||||  | |||||||| ||| |||   |||||||||| ||||||| |||||||||||||||| ||| |||||||  |||||||||| |||||    
T  399792 ttaaagctagcaaacctcactttgttcacatgtttcttcttctttctctctgccttagtgctctcatataaactcggatagtgttgctcaaagtttgata 399891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 416
Target Start/End: Original strand, 28225767 - 28225864
Alignment:
Q  322 gtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttcttctttt---tctctgcattagtgctctcatatagacttggata 416  Q
    ||||||||||  ||| |||||||| || ||  |||||||||| ||| ||||||||||||||   ||||| | |||||||||||| |||||||||||||    
T  28225767 gtcctcattccggctgagttaaagttaacaaacttcactttgatcacatgcttcttcttttctctctctaccttagtgctctcagatagacttggata 28225864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 455 - 500
Target Start/End: Original strand, 27787010 - 27787055
Alignment:
Q  455 cctcttctacctcatcgcctcaaaatttggaaagaatttgcacact 500  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||||    
T  27787010 cctcttctacttcatcccctcaaaatttggaaagaatctgcacact 27787055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 36206249 - 36206298
Alignment:
Q  56 caaagcactaaaatataaaagacaagagatgcctgaaccaatacaacaga 105  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||| ||||    
T  36206249 caaagcactaaaatataaaagacaggagaggcctgaatcaatacatcaga 36206298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 500
Target Start/End: Original strand, 8831460 - 8831505
Alignment:
Q  455 cctcttctacctcatcgcctcaaaatttggaaagaatttgcacact 500  Q
    |||||||||| ||||| || ||||||||||||||||| ||||||||    
T  8831460 cctcttctacttcatccccccaaaatttggaaagaatctgcacact 8831505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 3801344 - 3801292
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagag 106  Q
    ||||||| | |||||||||||||||| |||| | ||||||||||||| |||||    
T  3801344 atcaaagtaataaaatataaaagacaggagaggtctgaaccaatacatcagag 3801292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 310 - 436
Target Start/End: Original strand, 24239885 - 24240011
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttcttctttttctctgcattagtgctctcatatagac 409  Q
    ||||||||||||||||||||||  ||| |||||||||||| ||||||||||||  |||  | |||||||||| ||  ||| |||||||||||| ||||||    
T  24239885 ttttgggcacgggtcctcattccggctgagttaaagctagtaggcttcactttattcacctacttcttctttctcgatgccttagtgctctcagatagac 24239984  T
Q  410 ttggatagtactgctcaaagtctgata 436  Q
    ||||||||| |||||||||||||||||    
T  24239985 ttggatagtgctgctcaaagtctgata 24240011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 416
Target Start/End: Original strand, 16593811 - 16593920
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgctt---cttctttttctctgcattagtgctctcatata 406  Q
    |||||||||||||| |||||||  ||||||||||| ||||||||| ||||||||  ||  |||||   ||||||||||||||| |||||||||||  |||    
T  16593811 ttttgggcacgggttctcattccggctaagttaaaactagcaggcctcactttgtgcacgtgcttctacttctttttctctgccttagtgctctccgata 16593910  T
Q  407 gacttggata 416  Q
    ||||||||||    
T  16593911 gacttggata 16593920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 418
Target Start/End: Complemental strand, 37050092 - 37049967
Alignment:
Q  297 tttgaaggtagctttttgggcacgggtcctcattctagctaagttaaagctagca-ggcttcactttgctcatatg---cttcttctttttctctgcatt 392  Q
    |||| ||||| | ||||||||||| ||||||||||  ||| ||||||| |||| | |||||||||||| ||| |||   |||||||||||||||||| ||    
T  37050092 tttggaggtacccttttgggcacgagtcctcattccggctgagttaaaactagaaaggcttcactttgttcacatgtttcttcttctttttctctgcctt 37049993  T
Q  393 agtgctctcatatagacttggatagt 418  Q
    |||||| ||| |||||||||||||||    
T  37049992 agtgctttcagatagacttggatagt 37049967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 19852836 - 19852785
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagag 106  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  19852836 atcaaagcactaaaata-aaaagacaggagatgcctgaaccaatacaacagag 19852785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 416
Target Start/End: Complemental strand, 19852562 - 19852453
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttct---tctttttctctgcattagtgctctcatata 406  Q
    |||||||||||||| |||||||  | | ||||||| ||||||||| ||||||||  ||  |||||||   ||||||||||||| |||||||||||  |||    
T  19852562 ttttgggcacgggttctcattccgggtgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttctctgccttagtgctctccgata 19852463  T
Q  407 gacttggata 416  Q
    ||||||||||    
T  19852462 gacttggata 19852453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 37050380 - 37050306
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaa 129  Q
    ||||||||| ||||||||||||| || |||| ||| ||||||||||||||||| ||||||||| | ||||||||||    
T  37050380 atcaaagcaataaaatataaaag-catgagaggcccgaaccaatacaacagagtcacatagtgtaaaacctatgaa 37050306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 16593537 - 16593588
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagag 106  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  16593537 atcaaagcactaaaata-aaaagacaggagatgtctgaaccaatacaacagag 16593588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 18522040 - 18522099
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacata 113  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||| | ||||| ||||||    
T  18522040 atcaaagcaataaaatataaaagacaggagaggcctgaaccaatatatcagagtcacata 18522099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 37049921 - 37049876
Alignment:
Q  455 cctcttctacctcatcgcctcaaaatttggaaagaatttgcacact 500  Q
    ||||||||||||| || || ||||||||||||||||||||||||||    
T  37049921 cctcttctacctcttccccccaaaatttggaaagaatttgcacact 37049876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 7500429 - 7500378
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacaga 105  Q
    ||||||||| |||||||||| ||||| || | ||||||||||||||||||||    
T  7500429 atcaaagcaataaaatataacagacaggataggcctgaaccaatacaacaga 7500378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 435
Target Start/End: Original strand, 16832189 - 16832310
Alignment:
Q  317 cacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttc---ttctttttctctgcattagtgctctcatatagacttgg 413  Q
    |||| |||||||||| | || |||||||| ||| ||||||||||||| ||| |||||||   ||| || ||||||| ||||| |||| | | ||| ||||    
T  16832189 cacgtgtcctcattccaactgagttaaagttagtaggcttcactttgttcacatgcttcttattccttctctctgccttagttctctaagaaagagttgg 16832288  T
Q  414 atagtactgctcaaagtctgat 435  Q
    | | | ||||||||||||||||    
T  16832289 acaatgctgctcaaagtctgat 16832310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 7492378 - 7492293
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaagagaaaatcc 139  Q
    ||||||| | |||||||||||||||| || | |||| ||||||||||||||||  |||||| | | ||||||| || ||| |||||    
T  7492378 atcaaagtaataaaatataaaagacaggataggcctcaaccaatacaacagagatacatagagtaaaacctattaaaagagaatcc 7492293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 19852366 - 19852321
Alignment:
Q  455 cctcttctacctcatcgcctcaaaatttggaaagaatttgcacact 500  Q
    |||||||||| || || || ||||||||||||||||||||||||||    
T  19852366 cctcttctacatcttccccccaaaatttggaaagaatttgcacact 19852321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 287 - 443
Target Start/End: Original strand, 4263388 - 4263544
Alignment:
Q  287 ccaagtcaattttgaaggtagctttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttcttctttttctc 386  Q
    ||||| |||||||| ||| | | ||||| ||||||||||||||||  ||| ||||||| ||||||||||||| |||| | | ||||||||||||||||||    
T  4263388 ccaagacaattttggaggaacccttttgagcacgggtcctcattccggctgagttaaaactagcaggcttcattttgtttacatgcttcttctttttctc 4263487  T
Q  387 tgcattagtgctctcatatagacttggatagtactgctcaaagtctgatacaatggc 443  Q
    ||| |||||||||| | | ||  ||||||||| | |||||||||||||||| |||||    
T  4263488 tgccttagtgctcttagaaaggtttggatagtgccgctcaaagtctgatacgatggc 4263544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 436
Target Start/End: Complemental strand, 10990102 - 10989973
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttg--ctcat-atgcttcttctttttctctgcattagtgctctcatata 406  Q
    ||||| ||||| |||||||||   |||||||||||||||| ||| |||||||||  ||| |  |||||||||||| || |||| |||||||||||| ||     
T  10990102 ttttgtgcacgagtcctcatttcggctaagttaaagctagaaggattcactttgttctcttgctgcttcttctttctcgctgccttagtgctctcagatt 10990003  T
Q  407 gacttggatagtactgctcaaagtctgata 436  Q
     || |||||||| |||||||||||||||||    
T  10990002 tacatggatagtgctgctcaaagtctgata 10989973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 418
Target Start/End: Complemental strand, 25167934 - 25167810
Alignment:
Q  297 tttgaaggtagctttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatg---cttcttctttttctctgcatta 393  Q
    |||| ||||| | ||||||||| | |||||| |||  ||| ||||||| |||| ||||||||||||| ||| |||   |||||||||| ||||||| |||    
T  25167934 tttggaggtacccttttgggcatgagtcctctttccggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctctctgcctta 25167835  T
Q  394 gtgctctcatatagacttggatagt 418  Q
    ||||| ||| |||||||||||||||    
T  25167834 gtgctttcagatagacttggatagt 25167810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 3949714 - 3949640
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaa 129  Q
    ||||||||| ||||||||||||| || |||| | ||||||||||||||||||| ||||||||| | ||||||||||    
T  3949714 atcaaagcaataaaatataaaag-catgagaggtctgaaccaatacaacagagacacatagtgtaaaacctatgaa 3949640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 25168221 - 25168148
Alignment:
Q  55 tcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaa 129  Q
    |||||||| |||||||||||||  | |||| ||||||||||||||||||||| ||||||||| | ||||||||||    
T  25168221 tcaaagcagtaaaatataaaagt-aggagaggcctgaaccaatacaacagagtcacatagtgtaaaacctatgaa 25168148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 2606611 - 2606685
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaa 129  Q
    ||||||||| ||||||||||||| |  |||| ||||||||||||||| ||||| |||| |||||| ||||||||||    
T  2606611 atcaaagcagtaaaatataaaag-ctggagaagcctgaaccaatacatcagagtcacaaagtgaaaaacctatgaa 2606685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 10990368 - 10990286
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaagagaaaa 136  Q
    ||||||| |||||||||| ||||||  |||| | ||||||||||||| ||||| ||||  ||||| |||||||||| ||||||    
T  10990368 atcaaagtactaaaatattaaagacgggagaggtctgaaccaatacagcagagtcacaatgtgaacaacctatgaaaagaaaa 10990286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 25167764 - 25167719
Alignment:
Q  455 cctcttctacctcatcgcctcaaaatttggaaagaatttgcacact 500  Q
    ||||||||||||| || || ||||||||||||||||||||||||||    
T  25167764 cctcttctacctcttccccccaaaatttggaaagaatttgcacact 25167719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 13535437 - 13535386
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagag 106  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||||| ||||    
T  13535437 atcaaagcactaaaata-aaaagacaggagatgtctgaaccaatacaatagag 13535386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 29708997 - 29708952
Alignment:
Q  455 cctcttctacctcatcgcctcaaaatttggaaagaatttgcacact 500  Q
    |||||||||| ||||| || ||||||||||||||||| ||||||||    
T  29708997 cctcttctacttcatccccccaaaatttggaaagaatctgcacact 29708952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 287 - 442
Target Start/End: Original strand, 21844910 - 21845068
Alignment:
Q  287 ccaagtcaattttgaaggtagctttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttcttct---tttt 383  Q
    |||||||||||||| ||||  | ||||| ||||||||||| |||  |||| ||||||| | ||||| ||||||||| |||| | |||||||||   ||||    
T  21844910 ccaagtcaattttggaggtgcccttttgagcacgggtccttatttcagctgagttaaatcaagcagacttcacttttctcacaggcttcttctaattttt 21845009  T
Q  384 ctctgcattagtgctctcatatagacttggatagtactgctcaaagtctgatacaatgg 442  Q
    |||||| ||| ||||||||||||| |||||||||| ||||||||||| |||||||||||    
T  21845010 ctctgccttaatgctctcatataggcttggatagtgctgctcaaagtatgatacaatgg 21845068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 429
Target Start/End: Complemental strand, 16893155 - 16893033
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttctt---ctttttctctgcattagtgctctcatata 406  Q
    ||||| ||||||||||||||||  ||| |||| || |||| ||||||||||||| |||  ||||||||   |||||| ||||| |||||||||||  | |    
T  16893155 ttttgagcacgggtcctcattccggctgagttgaacctagtaggcttcactttgttcacctgcttcttttgctttttatctgccttagtgctctctgaca 16893056  T
Q  407 gacttggatagtactgctcaaag 429  Q
    |||||||||||| ||||||||||    
T  16893055 gacttggatagtgctgctcaaag 16893033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 18028331 - 18028383
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagag 106  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  18028331 atcaaagcactaaaatataaaagatatgagatgcctgaaccaatacaacagag 18028383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 428
Target Start/End: Complemental strand, 51524945 - 51524824
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttcttctt-tttctct--gcattagtgctctcatata 406  Q
    ||||||||||||||||||||||  ||| |||||||||||  |||| |||||||   ||  ||||||||||| |||||||  || ||| |||||||| |||    
T  51524945 ttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctcagccttattgctctcagata 51524846  T
Q  407 gacttggatagtactgctcaaa 428  Q
    |||||||||||| |||||||||    
T  51524845 gacttggatagtgctgctcaaa 51524824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 29347174 - 29347102
Alignment:
Q  57 aaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaa 129  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||||||  |||||| | | ||||||||||    
T  29347174 aaagcaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagagtaaaacctatgaa 29347102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 310 - 416
Target Start/End: Complemental strand, 31067254 - 31067144
Alignment:
Q  310 ttttgggcacgggtcctcattctag-ctaagttaaagctagcaggcttcactttgctcatatgcttcttctt---tttctctgcattagtgctctcatat 405  Q
    |||| |||||||||||||||||  | || |||||||||||||| || ||||||||  || ||||||||||||   ||||||||| |||||||||||  ||    
T  31067254 ttttaggcacgggtcctcattcccgactgagttaaagctagcaagcctcactttgtgcacatgcttcttcttctttttctctgccttagtgctctccgat 31067155  T
Q  406 agacttggata 416  Q
    |||||||||||    
T  31067154 agacttggata 31067144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 51525207 - 51525125
Alignment:
Q  57 aaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaagagaaaatcc 139  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||  |||  ||| | |||||||||| || ||||||    
T  51525207 aaagcactaaaatataaaagacaggagaggcctgagccaatacaacagagttacaatgtgtaaaacctatgaaaagtaaatcc 51525125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 3367243 - 3367300
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccaca 111  Q
    |||||||||||||||||||||| ||| ||||||| |||| ||||||||||||| ||||    
T  3367243 atcaaagcactaaaatataaaaaacaggagatgcatgaatcaatacaacagagtcaca 3367300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 418
Target Start/End: Original strand, 35526603 - 35526718
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttcttctt-------tttctctgcattagtgctctca 402  Q
    ||||||||||||||||||||||  ||  |||||||||||| |||| |||||||| |||  |||||||||||       ||| |||  |||||||||||||    
T  35526603 ttttgggcacgggtcctcattccggccgagttaaagctagaaggcatcactttgttcacctgcttcttcttcttactctttgtcttaattagtgctctca 35526702  T
Q  403 tatagacttggatagt 418  Q
     |||||||||||||||    
T  35526703 gatagacttggatagt 35526718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 436
Target Start/End: Original strand, 26796927 - 26796991
Alignment:
Q  372 cttcttctttttctctgcattagtgctctcatatagacttggatagtactgctcaaagtctgata 436  Q
    |||||||||| ||||||| |||||||||||| ||||||| |||| || ||||||||| |||||||    
T  26796927 cttcttctttctctctgccttagtgctctcagatagactcggatggtgctgctcaaaatctgata 26796991  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 21844701 - 21844752
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacaga 105  Q
    |||||| ||||||||||||||||||| |||||| |||||| |||||||||||    
T  21844701 atcaaaacactaaaatataaaagacaggagatgtctgaactaatacaacaga 21844752  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 26796582 - 26796643
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtg 116  Q
    ||||||||||||||| ||||||||||  |||||| |||||||||||||||||| |||| ||||    
T  26796582 atcaaagcactaaaa-ataaaagacagaagatgcttgaaccaatacaacagagtcacaaagtg 26796643  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 51524764 - 51524719
Alignment:
Q  455 cctcttctacctcatcgcctcaaaatttggaaagaatttgcacact 500  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||    
T  51524764 cctcttctacttcatccccccaaaatttggaaagaatttgcacact 51524719  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 35526303 - 35526354
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagag 106  Q
    ||||||||| ||||||||||||||| ||||| |||||||||||||||| ||||    
T  35526303 atcaaagcaataaaatataaaagac-agagaggcctgaaccaatacaatagag 35526354  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 385
Target Start/End: Complemental strand, 29346876 - 29346801
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttcttctttttct 385  Q
    ||||| ||||||||||||||||  |||||||||||||||  |||| |||| ||| |||  ||||||||||| ||||    
T  29346876 ttttgtgcacgggtcctcattccggctaagttaaagctataaggcatcacgttgttcacctgcttcttcttcttct 29346801  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 500
Target Start/End: Original strand, 21845202 - 21845247
Alignment:
Q  454 tcctcttctacctcatcgcctcaaaatttggaaagaatttgcacact 500  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||    
T  21845202 tcctcttctacctcatcccc-caaaatttggaaagaatctgcacact 21845247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 29346805 - 29346763
Alignment:
Q  372 cttcttctttttctctgcattagtgctctcatatagacttgga 414  Q
    |||||||||||||||||  |||||||||||| |||||||||||    
T  29346805 cttcttctttttctctgtcttagtgctctcaaatagacttgga 29346763  T

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Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 310 - 461
Target Start/End: Complemental strand, 18693179 - 18693028
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttcttctttttctctgcattagtgctctcatatagac 409  Q
    |||| ||||| |||||||||||  ||| ||||||||||||||| |||||||||| |   | ||||||||||||||||||| |||||||||||||| ||      
T  18693179 ttttaggcacaggtcctcattccggcttagttaaagctagcagacttcactttgtttgcacgcttcttctttttctctgccttagtgctctcataaaggt 18693080  T
Q  410 ttggatagtactgctcaaagtctgatacaatggctttagtgttgtcctcttc 461  Q
    ||||||||| |||| |||||||| |||| | ||||| |   |||||||||||    
T  18693079 ttggatagtgctgcacaaagtctaatacgacggcttcaacattgtcctcttc 18693028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 18811481 - 18811533
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagag 106  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  18811481 atcaaagcactaaaatataaaagacaggagaggcctgaaccaatacaacagag 18811533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 270 - 424
Target Start/End: Original strand, 14296260 - 14296417
Alignment:
Q  270 caactataatgtagctaccaagtcaattttgaaggtagctttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcata 369  Q
    ||||||| ||||| || ||||| ||  |||| ||||| | |||||| |||| || |||||||  ||| |||||||||||| |||||||| |||| ||||     
T  14296260 caactattatgtatctgccaaggcatctttggaggtacccttttggacacgagtgctcattccggctgagttaaagctagtaggcttcattttgttcatc 14296359  T
Q  370 tg---cttcttctttttctctgcattagtgctctcatatagacttggatagtactgct 424  Q
    ||   |||||||||| ||||| | ||||| |||||| ||||||||||||||| |||||    
T  14296360 tgcttcttcttctttctctctaccttagtactctcagatagacttggatagtgctgct 14296417  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 13502936 - 13502884
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagag 106  Q
    |||||||||||||||||||||||||| ||||||| |||| |||||||||||||    
T  13502936 atcaaagcactaaaatataaaagacaggagatgcatgaatcaatacaacagag 13502884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 428
Target Start/End: Original strand, 18811747 - 18811868
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatg---cttcttctttttctctgcattagtgctctcatata 406  Q
    ||||||||||||||||||||||  ||| |||||||||||  | ||||||||||   ||  ||   |||||||||| ||||||| ||| |||||||| |||    
T  18811747 ttttgggcacgggtcctcattccggctgagttaaagctataaagcttcactttatgcacctgcttcttcttctttctctctgccttattgctctcaaata 18811846  T
Q  407 gacttggatagtactgctcaaa 428  Q
     ||||||||||| |||||||||    
T  18811847 aacttggatagtgctgctcaaa 18811868  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 297 - 418
Target Start/End: Complemental strand, 31092407 - 31092283
Alignment:
Q  297 tttgaaggtagctttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctca---tatgcttcttctttttctctgcatta 393  Q
    |||| ||||| | ||||||||||| ||||||||||  ||| ||||||| |||| |||| |||||||  |||    || |||||||||| ||||||  |||    
T  31092407 tttggaggtacccttttgggcacgagtcctcattccggctgagttaaatctagaaggcatcactttattcacgtgattcttcttctttctctctgtctta 31092308  T
Q  394 gtgctctcatatagacttggatagt 418  Q
    ||||||||| |||||||||||||||    
T  31092307 gtgctctcagatagacttggatagt 31092283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 30180171 - 30180089
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagagccacatagtgaagaacctatgaagagaaaa 136  Q
    ||||||||| ||||||||||| ||| ||||| ||||||| ||||||| ||||| |||| |||| | || ||||||| ||||||    
T  30180171 atcaaagcaataaaatataaacgacgagagaggcctgaatcaatacaccagagtcacaaagtgtaaaatctatgaaaagaaaa 30180089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 37344531 - 37344486
Alignment:
Q  455 cctcttctacctcatcgcctcaaaatttggaaagaatttgcacact 500  Q
    |||||||||||||||| || ||||||||||||||||| ||||||||    
T  37344531 cctcttctacctcatccccccaaaatttggaaagaatctgcacact 37344486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 418
Target Start/End: Complemental strand, 37344697 - 37344586
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatg---cttcttctttttctctgcattagtgctctcatata 406  Q
    |||||||||||  |||||||||  ||| ||||||| |||| | | ||||||||| |||  ||   |||||||||| ||||||| |||||||| ||| |||    
T  37344697 ttttgggcacgaatcctcattccggctgagttaaaactagaatgattcactttgttcacctgtttcttcttctttctctctgccttagtgctttcaaata 37344598  T
Q  407 gacttggatagt 418  Q
    ||||||||||||    
T  37344597 gacttggatagt 37344586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 414
Target Start/End: Complemental strand, 13502760 - 13502653
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctc---atatgcttcttctttttctctgcattagtgctctcatata 406  Q
    ||||||||||||  ||||||||| ||| ||||||||||||||| | |  ||||| ||   |  | |||||||||||||||||| |||||||||||  | |    
T  13502760 ttttgggcacggaccctcattctggctgagttaaagctagcagaccttcctttgttcacgagcttcttcttctttttctctgccttagtgctctccgaaa 13502661  T
Q  407 gacttgga 414  Q
    ||||||||    
T  13502660 gacttgga 13502653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 31092668 - 31092619
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaaca 103  Q
    ||||||||| |||||||||||||||  ||||  |||||||||||||||||    
T  31092668 atcaaagcaataaaatataaaagacgggagagacctgaaccaatacaaca 31092619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 45513526 - 45513477
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaaca 103  Q
    |||| ||||||||||||||||||||  |||||||||||| |||| |||||    
T  45513526 atcacagcactaaaatataaaagactggagatgcctgaatcaatgcaaca 45513477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 436
Target Start/End: Complemental strand, 10337 - 10208
Alignment:
Q  310 ttttgggcacgggtcctcattctagctaagttaaagctagcaggcttcactttgctcatatgcttct---tctttttctctgcattagtgctctcatata 406  Q
    |||| |||||||||||||||||  ||| ||||||| ||||||||| ||||||||  ||  |||||||   ||||||||||||| |||||||||||  |||    
T  10337 ttttaggcacgggtcctcattccggctgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttctctgccttagtgctctccgata 10238  T
Q  407 gacttggatagtactgctcaaagtctgata 436  Q
    |||||||||| || | ||||||||| ||||    
T  10237 gacttggataatatttctcaaagtcagata 10208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 10611 - 10560
Alignment:
Q  54 atcaaagcactaaaatataaaagacaagagatgcctgaaccaatacaacagag 106  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  10611 atcaaagcactaaaata-aaaagacaggagatgcctgaaccaatacaacagag 10560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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