View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15250_low_1 (Length: 660)
Name: NF15250_low_1
Description: NF15250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15250_low_1 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 598; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 18 - 660
Target Start/End: Complemental strand, 15733885 - 15733243
Alignment:
| Q |
18 |
gaattatggtaaaggaactaactattccacctttgtacattggtgatcacagaggtactgtttttcgcaacatagttgcatttgaaaaatgtcacaagag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15733885 |
gaattatggtaaaggaactaactattccacctttgtacattggtgatcacagaggtactgtttttcgcaacatagttgcatttgaaaaatgtcacaagag |
15733786 |
T |
|
| Q |
118 |
atgcaatccagacatgacaacttacatgtttttcttaaacagactcataaattcagctaatgatgtttctgctcttcattataaaggggttattcatcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15733785 |
atgcaatccagacatgacaacttacatgtttttcttaaacagactcataaattcagctaatgatgtttctgctcttcattataaaggggttattcatcat |
15733686 |
T |
|
| Q |
218 |
tctttaggaagtgatgaacatgtcgcggaattgatcaacaacatagctaaagaaatagttcctgatatgaatgagtcatatttgtacaacgtggtgaatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15733685 |
tctttaggaagtgatgaacatgtcgcggaattgatcaacaacatagctaaagaaatagttcctgatatgaatgagtcatatttgtacaacgtggtgaatg |
15733586 |
T |
|
| Q |
318 |
aggcgaatgagtatttgggttgttggcgtgcgagattcagagcttcgcttgttcataactatttaacaagttgggctgtgggactttctacattaggtgc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15733585 |
aggcgaatgagtatttgggttgttggcgtgcgagattcagagcttcgcttgttcataactatttaacaagttgggctgtgggactttctacattaggtgc |
15733486 |
T |
|
| Q |
418 |
tcttttggcactttattttacattcatacaagcaatttgtggattcgcagatgcggccacaaaactggagaaagcaaagttcagttcagtgataagaagt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15733485 |
tcttttggcactttattttacattcatacaagcaatttgtggtttcgcagatgcggccacaaaactggagaaagcaaagttcagttcagtgataagaagt |
15733386 |
T |
|
| Q |
518 |
ttgattataattccatttcgtgaccctcctcactatacagtgttcgacgatgtcagtnnnnnnntcgaccatggtactaataattgaacatctacatatg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
15733385 |
ttgattataattccatttcgtgaccctcctcactatacagtattcgacgatgtcagtaaaaaaatcgaccatggtactaataattgaatatctacatatc |
15733286 |
T |
|
| Q |
618 |
agggattgctgcttgtcatacgtgtgatcgatgtctctactta |
660 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
15733285 |
agggattgatgcttgtcatacatgtgatcgatgtctctactta |
15733243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 15727866 - 15727434
Alignment:
| Q |
18 |
gaattatggtaaaggaactaactattccacctttgtacattggtgatcacagaggtactgtttttcgcaacatagttgcatttgaaaaatgtcacaagag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15727866 |
gaattatggtaaaggaactaactattccacctttgtacattggtgatcacagaggtactgtttttcgcaacatagttgcatttgaaaaatgtcacaagag |
15727767 |
T |
|
| Q |
118 |
atgcaatccagacatgacaacttacatgtttttcttaaacagactcataaattcagctaatgatgtttctgctcttcattataaaggggttattcatcat |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15727766 |
atgcaatctagacatgacaacttacatgtttttcttaaacagactcataaactcagctaatgatgtttctgctcttcattataaaggggttattcatcat |
15727667 |
T |
|
| Q |
218 |
tctttaggaagtgatgaacatgtcgcggaattgatcaacaacatagctaaagaaatagttcctgatatgaatgagtcatatttgtacaacgtggtgaatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15727666 |
tctttaggaagtgatgaacatgtcgcggaattgatcaacaacatagctaaagaaatagttcctgatatgaatgagtcatatttgtacaaagtggtgaatg |
15727567 |
T |
|
| Q |
318 |
aggcgaatgagtatttgggttgttggcgtgcgagattcagagcttcgcttgttcataactatttaacaagttgggctgtgggactttctacattaggtgc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15727566 |
aggcgaatgagtatttgggttgttggcgtgcgagattcagagcttcgcttgttcataactatttaacaagttgggctgtgggactttctacaataggtgc |
15727467 |
T |
|
| Q |
418 |
tcttttggcactttattttacattcatacaagc |
450 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
15727466 |
tcttttggctctttattttacattcatacaagc |
15727434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 458
Target Start/End: Complemental strand, 18057269 - 18056832
Alignment:
| Q |
21 |
ttatggtaaaggaactaactattccacctttgtacattggtgatcacagaggtactgtttttcgcaacatagttgcatttgaaaaatgtcacaagagatg |
120 |
Q |
| |
|
||||| ||||| ||||||||||||| || ||||||||||||||||| ||||| || || ||||| ||||| |||||||| || ||||||||||||||||| |
|
|
| T |
18057269 |
ttatgataaagcaactaactattcctccattgtacattggtgatcatagaggaaccgtgtttcgtaacatcgttgcattcgagaaatgtcacaagagatg |
18057170 |
T |
|
| Q |
121 |
caatccagacatgacaacttacatgtttttcttaaacagactcataaattcagctaatgatgtttctgctcttcattataaaggggttattcatcattct |
220 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||| |||||||||| || | || |||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
18057169 |
caacccagacatgacaaattacatgtttttcttaaacggactcataaactcgaccaacgatgtttctgttcttcattataaagggattattcatcattct |
18057070 |
T |
|
| Q |
221 |
ttaggaagtgatgaacatgtcgcggaattgatcaacaacatagctaaagaaatagttcctgatatgaatgagtcatatttgtacaacgtggtgaatgagg |
320 |
Q |
| |
|
||||| |||||||||||||| | ||| | |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| || |||||||| | |
|
|
| T |
18057069 |
ttagggagtgatgaacatgtggaagaactaatcaacaacataactaaagatatagttcctgatatgaatgagtcatatttatacaaagttgtgaatgatg |
18056970 |
T |
|
| Q |
321 |
cgaatgagtatttgggttgttggcgtgcgagattcagagcttcgcttgttcataactatttaacaagttgggctgtgggactttctacattaggtgctct |
420 |
Q |
| |
|
| ||||| |||||| ||| ||||||||| |||| |||| | | |||| || ||||||||||| || ||||||||||||||||| || || || ||| | |
|
|
| T |
18056969 |
caaatgattatttgagttcttggcgtgcaggattgagagttgcaattgtgcacaactatttaactagctgggctgtgggactttcaacctttggggcttt |
18056870 |
T |
|
| Q |
421 |
tttggcactttattttacattcatacaagcaatttgtg |
458 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
18056869 |
tttggctctttactttacattcatacaagcaatttgtg |
18056832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University