View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15250_low_2 (Length: 491)

Name: NF15250_low_2
Description: NF15250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15250_low_2
NF15250_low_2
[»] chr1 (23 HSPs)
chr1 (170-474)||(36834108-36834411)
chr1 (172-331)||(35050322-35050481)
chr1 (172-342)||(27332956-27333126)
chr1 (169-343)||(9411732-9411907)
chr1 (169-343)||(16129978-16130153)
chr1 (162-343)||(16130520-16130703)
chr1 (169-343)||(27654610-27654783)
chr1 (169-331)||(5800451-5800613)
chr1 (169-343)||(40988083-40988257)
chr1 (172-343)||(1553721-1553892)
chr1 (162-342)||(45192579-45192760)
chr1 (7-94)||(18431525-18431614)
chr1 (172-342)||(30222698-30222868)
chr1 (162-331)||(13879061-13879219)
chr1 (169-275)||(34546723-34546826)
chr1 (172-265)||(27846418-27846511)
chr1 (172-272)||(4813769-4813869)
chr1 (175-272)||(11907954-11908049)
chr1 (7-92)||(22788277-22788360)
chr1 (169-263)||(23933332-23933427)
chr1 (225-331)||(35121187-35121293)
chr1 (159-229)||(35428419-35428494)
chr1 (169-230)||(41957262-41957323)
[»] chr4 (13 HSPs)
chr4 (164-343)||(50150325-50150505)
chr4 (169-331)||(30537645-30537807)
chr4 (161-342)||(43034135-43034317)
chr4 (169-343)||(26877167-26877342)
chr4 (169-342)||(782798-782972)
chr4 (169-342)||(36187324-36187498)
chr4 (162-341)||(25934347-25934526)
chr4 (169-343)||(27627757-27627930)
chr4 (162-336)||(3067740-3067914)
chr4 (172-291)||(33313287-33313406)
chr4 (169-257)||(56551489-56551573)
chr4 (176-251)||(29989703-29989779)
chr4 (183-251)||(44538441-44538509)
[»] chr7 (11 HSPs)
chr7 (161-343)||(24989718-24989901)
chr7 (172-342)||(8417664-8417834)
chr7 (169-293)||(7568193-7568317)
chr7 (169-331)||(23319990-23320153)
chr7 (169-343)||(48394177-48394350)
chr7 (169-331)||(18674519-18674682)
chr7 (169-342)||(48390334-48390508)
chr7 (159-275)||(41851018-41851135)
chr7 (7-97)||(46437447-46437539)
chr7 (161-285)||(45062518-45062643)
chr7 (197-253)||(965166-965222)
[»] chr3 (19 HSPs)
chr3 (161-343)||(54747995-54748178)
chr3 (161-343)||(25095992-25096175)
chr3 (172-343)||(26848177-26848348)
chr3 (169-343)||(35613033-35613208)
chr3 (161-343)||(25313368-25313552)
chr3 (162-343)||(50834011-50834194)
chr3 (162-343)||(50841659-50841842)
chr3 (172-331)||(22515655-22515815)
chr3 (169-293)||(48905648-48905772)
chr3 (169-331)||(20922788-20922951)
chr3 (169-343)||(46320438-46320613)
chr3 (169-342)||(23026300-23026474)
chr3 (169-293)||(9663920-9664041)
chr3 (169-343)||(49794971-49795147)
chr3 (7-93)||(26555618-26555702)
chr3 (7-65)||(52118463-52118521)
chr3 (170-251)||(33280335-33280416)
chr3 (174-247)||(32619323-32619396)
chr3 (204-249)||(31612861-31612906)
[»] chr5 (14 HSPs)
chr5 (170-343)||(33314333-33314506)
chr5 (172-343)||(21262915-21263086)
chr5 (169-342)||(40385249-40385425)
chr5 (169-343)||(3097565-3097740)
chr5 (169-331)||(24868483-24868646)
chr5 (169-343)||(41174675-41174849)
chr5 (169-264)||(4237936-4238031)
chr5 (37-94)||(424679-424735)
chr5 (37-94)||(18113674-18113730)
chr5 (170-272)||(2934903-2935006)
chr5 (23-58)||(17074734-17074769)
chr5 (207-253)||(2355977-2356023)
chr5 (207-253)||(2356062-2356108)
chr5 (175-247)||(18471608-18471680)
[»] chr2 (20 HSPs)
chr2 (161-343)||(10448723-10448906)
chr2 (161-343)||(11964155-11964338)
chr2 (162-331)||(39778658-39778829)
chr2 (169-342)||(36191590-36191763)
chr2 (169-343)||(19926801-19926974)
chr2 (169-343)||(10728307-10728482)
chr2 (172-342)||(21345098-21345265)
chr2 (164-331)||(22066384-22066552)
chr2 (162-341)||(41435615-41435795)
chr2 (156-341)||(13693530-13693716)
chr2 (172-336)||(25186950-25187114)
chr2 (169-342)||(42993820-42993994)
chr2 (169-293)||(7105608-7105732)
chr2 (169-336)||(28830969-28831137)
chr2 (169-331)||(10700238-10700401)
chr2 (7-94)||(16916258-16916347)
chr2 (209-343)||(41462670-41462805)
chr2 (169-235)||(16621989-16622053)
chr2 (175-242)||(45695655-45695721)
chr2 (130-164)||(16916383-16916417)
[»] chr8 (13 HSPs)
chr8 (169-342)||(32305713-32305887)
chr8 (158-336)||(8669746-8669924)
chr8 (161-342)||(13882091-13882272)
chr8 (169-342)||(8106899-8107072)
chr8 (172-336)||(29226288-29226451)
chr8 (168-331)||(35634804-35634968)
chr8 (172-331)||(37533783-37533942)
chr8 (161-275)||(42569975-42570090)
chr8 (175-263)||(36741715-36741806)
chr8 (7-93)||(28535305-28535389)
chr8 (169-272)||(17855424-17855527)
chr8 (179-231)||(31598688-31598740)
chr8 (178-233)||(32026755-32026810)
[»] chr6 (5 HSPs)
chr6 (168-343)||(24338025-24338201)
chr6 (162-343)||(1365649-1365832)
chr6 (169-336)||(7243430-7243598)
chr6 (7-97)||(5013972-5014064)
chr6 (7-92)||(16693112-16693195)
[»] scaffold0067 (1 HSPs)
scaffold0067 (172-275)||(6776-6879)
[»] scaffold0008 (1 HSPs)
scaffold0008 (197-336)||(258358-258498)
[»] scaffold0057 (2 HSPs)
scaffold0057 (169-268)||(30490-30589)
scaffold0057 (169-235)||(30844-30906)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 170 - 474
Target Start/End: Complemental strand, 36834411 - 36834108
Alignment:
Q  170 cctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactta 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| |  |||||||||||||||||||||||||||||     
T  36834411 cctaaattaattactctttattccaccaacttacttacttttaatattctctt--ataataaataagggtacaaatgaaatttagcttcaaacatacttg 36834314  T
Q  270 aaacttaatcgatcttcttataaagagaaccaaaa-aatatttcacttttgtttttaataaaagggacaggagggtatttaagctaaatcttgtgaaaac 368  Q
    ||| |||||| || |||||||||| ||||| |||| ||||||||||||||||||  |||||||| ||   || ||||||||||||||||||| |||||||    
T  36834313 aaatttaatcaattttcttataaaaagaacaaaaataatatttcacttttgtttcgaataaaagagatcagaaggtatttaagctaaatcttatgaaaac 36834214  T
Q  369 taacttaatatgcgtatatataatatacccacctctatcttttaaaattgacaatttaatacatttatgaaatatgttcattcaaaatggttcatgttca 468  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  36834213 taacttaatatacgtatatataatatacccacctctatcttttaaaattgacaatttaatacatttattaaatatgttcattcaaaatagttcatgttca 36834114  T
Q  469 tcttct 474  Q
    ||||||    
T  36834113 tcttct 36834108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 172 - 331
Target Start/End: Original strand, 35050322 - 35050481
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||    
T  35050322 taaattaattactctttatttcatcaacttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcagacatacttgaa 35050421  T
Q  272 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 331  Q
    |||| ||||||||| ||||||| ||||||||||||  | |||||||||||| ||||||||    
T  35050422 acttgatcgatctttttataaaaagaaccaaaaaaattctcacttttgtttctaataaaa 35050481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 172 - 342
Target Start/End: Original strand, 27332956 - 27333126
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||| |  ||||||||||||||||||||||||||||||||    
T  27332956 taaattaattactctttattccattaacttacttacttttaatattttctctcataatcaataagggtacaaatgaaatttagcttcaaacatacttaaa 27333055  T
Q  272 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
    |||| ||| ||||||||||||| || |||||||||  | |||||||||||| |||||||| |||| |||||    
T  27333056 acttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagg 27333126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 169 - 343
Target Start/End: Complemental strand, 9411907 - 9411732
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||| ||||||    
T  9411907 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaagtgaaatttaacttcaaatatactt 9411808  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
     ||||||  || ||  |||||||||| || |||||||||  |||||||||||||| |||||||| |||| ||||||    
T  9411807 gaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaatggaccggaggg 9411732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 169 - 343
Target Start/End: Original strand, 16129978 - 16130153
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  16129978 ccctaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 16130077  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
     ||||||  || ||  |||||||||| || ||||||   | |||||||||||||| |||||||| |||| ||||||    
T  16130078 gaaacttggtcaatatttcttataaaaaggaccaaattttttttcacttttgtttctaataaaaaggaccggaggg 16130153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 162 - 343
Target Start/End: Original strand, 16130520 - 16130703
Alignment:
Q  162 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 260  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  16130520 atgaatacccttaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaa 16130619  T
Q  261 acatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    |||||||| ||||||  || ||  |||||||||| || ||||||   | |||||||||||||| |||||||| |||| ||||||    
T  16130620 acatacttgaaacttggtcaatatttcttataaaaaggaccaaattttttttcacttttgtttctaataaaaaggaccggaggg 16130703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 169 - 343
Target Start/End: Complemental strand, 27654783 - 27654610
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| | ||||||||||||||| ||||||| ||||||    
T  27654783 ccctaaattaattactctttattccaccaacttacttacttttaatattc--tctcataataaataagggcacaaatgaaatttaacttcaaagatactt 27654686  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    ||||||| ||| ||  |||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  27654685 aaaacttgatcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 27654610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 169 - 331
Target Start/End: Original strand, 5800451 - 5800613
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  5800451 ccctaaattaatttctctttattccactaacttatttacttttaattttctctctcataataaataaggacacaaatgaaatttatcttcaaacatactt 5800550  T
Q  269 aaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 331  Q
     ||||||  || ||||||||||||| || |||||||||  |  ||||||||||| ||||||||    
T  5800551 gaaacttggtcaatcttcttataaaaaggaccaaaaaaattcccacttttgtttctaataaaa 5800613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 169 - 343
Target Start/End: Original strand, 40988083 - 40988257
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||| | |||||||||||||||| |||||||||||||    
T  40988083 ccctaaattaattactctttattccgccaacttacttacttttaatat--tctctcataataaataagggcacaaatgaaatttagtttcaaacatactt 40988180  T
Q  269 aaaacttaatcgat-cttcttataaagagaacc-aaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    |||||||  || ||  |||||||||| || ||| |||||| | ||||||||||||| |||||||| |||| ||||||    
T  40988181 aaaacttggtcaatatttcttataaaaaggaccaaaaaaaaaattcacttttgtttctaataaaaaggaccggaggg 40988257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 172 - 343
Target Start/End: Complemental strand, 1553892 - 1553721
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||    
T  1553892 taaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaa 1553793  T
Q  272 acttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    | || ||| || ||||||||||| || |||| ||||  | ||| |||||||| |||||||| |||| ||||||    
T  1553792 atttgatcaatacttcttataaaaaggaccacaaaaattctca-ttttgtttctaataaaaaggaccggaggg 1553721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 162 - 342
Target Start/End: Original strand, 45192579 - 45192760
Alignment:
Q  162 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 260  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||  ||||||||||| |||||| | ||    
T  45192579 atgaatacccttaaattaattactctttattccatcaacttacttatttttaatattctgtctcataattaataagaacacaaatgaattttagcataaa 45192678  T
Q  261 acatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
    | ||| |  |||||||||| ||||||||||||| || | |||||||  | |||||||||||| |||||||| |||| |||||    
T  45192679 aaatattagaaacttaatcaatcttcttataaaaaggatcaaaaaaattctcacttttgtttctaataaaaaggaccggagg 45192760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 18431525 - 18431614
Alignment:
Q  7 gtgagaagaaagacgattgtgaattgtgatttgtgagaagagaagaagaaaccgattgtttgtgagagtagag--gaggagaagaaacaa 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  18431525 gtgagaagaaagacgattgtgaattgtgatttgtgagaagagaagaagaaaccgattgtttgtgagagtagagaagaggagaagaaacaa 18431614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 172 - 342
Target Start/End: Complemental strand, 30222868 - 30222698
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||  ||||||||||| |||||| ||||||||| || ||    
T  30222868 taaattaattactctttaatccatcaacttacttacttttaatattctctttcataatcaataagaacacaaatgaattttagcatcaaacatatttgaa 30222769  T
Q  272 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
    |||| ||| ||||||||||||| |  | |||||||  | ||| |||||||| |||||||| |||| |||||    
T  30222768 acttgatcaatcttcttataaaaatgatcaaaaaaattctcatttttgtttctaataaaaaggaccggagg 30222698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 162 - 331
Target Start/End: Original strand, 13879061 - 13879219
Alignment:
Q  162 atgaataccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaa 261  Q
    ||||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||| | ||||||||||||||||           
T  13879061 atgaataccttaaattaattactctttcttccaccaacttatttactattaatattctatctcataataaataagggcacaaatgaaatttag------- 13879153  T
Q  262 catacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 331  Q
        ||| |||||| ||| |||||||| |||| || ||||||||| ||||||||||||||| ||||||||    
T  13879154 ----ctttaaacttgatcaatcttcttgtaaaaaggaccaaaaaaaatttcacttttgtttctaataaaa 13879219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 34546826 - 34546723
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||| | || |||||||| ||||||||||||||||||    
T  34546826 ccctaaattaattactctttattccaccaacttacttacttttaatat--tttctcataataaataagggcagaaatgaaa-ttagcttcaaacatactt 34546730  T
Q  269 aaaactt 275  Q
    |||||||    
T  34546729 aaaactt 34546723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 27846511 - 27846418
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacata 265  Q
    ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |  |||||||||||||| |||||||||||    
T  27846511 taaattaattactatctattccaccaacttacttacttttaatattatctctcataataaataagggtacaaatgaaatttaacttcaaacata 27846418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 4813769 - 4813869
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||  ||||||||||||||| | |||||||||||||||| ||||| || |||||||    
T  4813769 taaattaattacttttcattccaccaacttacttacttttaatattccttctcataataaataagggcacaaatgaaatttagtttcaagcacacttaaa 4813868  T
Q  272 a 272  Q
    |    
T  4813869 a 4813869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 11908049 - 11907954
Alignment:
Q  175 attaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaaa 272  Q
    ||||||||||||| |||||||||||||| ||| ||||||||  ||||||||||||||||||||||||||||||||||||| ||  |||| ||||||||    
T  11908049 attaattactcttgattccaccaacttatttatttttaata--ctctctcataataaataaagacacaaatgaaatttagttttcaacacacttaaaa 11907954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 22788277 - 22788360
Alignment:
Q  7 gtgagaagaaagacgattgtgaattgtgatttgtgagaagagaagaagaaaccgattgtttgtgagagtagag--gaggagaagaaac 92  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    ||||||||||||||  |||||||||||||    
T  22788277 gtgagaagaaagaagattgtgaattgtgatttgtgagaagagaagaagaaaccga----ttgtgagagtagagaagaggagaagaaac 22788360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 23933332 - 23933427
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttactttt-aatattctctctcataataaataaagacacaaatgaaatttagcttcaaaca 263  Q
    ||||||||||||||||||| |||| |||||||| |||| |||| |||||||||||  ||||||||||| | ||||||||||||||| |||||||||    
T  23933332 ccctaaattaattactcttgattctaccaactttcttattttttaatattctctcatataataaataagggcacaaatgaaatttaacttcaaaca 23933427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 331
Target Start/End: Complemental strand, 35121293 - 35121187
Alignment:
Q  225 ataataaataaagacacaaatgaaatttagcttcaaacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgttttt 324  Q
    ||||||||||| | |||||||||||||| ||||||||||||||| ||||||  || ||||||||||||| || |||||||||  |  ||| ||||||| |    
T  35121293 ataataaataagggcacaaatgaaattttgcttcaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaattcgcacatttgtttct 35121194  T
Q  325 aataaaa 331  Q
    |||||||    
T  35121193 aataaaa 35121187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 35428494 - 35428419
Alignment:
Q  159 tttatgaataccct-aaattaattactctttattccaccaa----cttacttacttttaatattctctctcataat 229  Q
    |||||||||||||| |||||||||||||||||||||| |||    |||||||||||||||| ||||||||||||||    
T  35428494 tttatgaatacccttaaattaattactctttattccatcaatcaacttacttacttttaattttctctctcataat 35428419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 41957262 - 41957323
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataata 230  Q
    ||||| ||||||||||||| ||| ||||||   |||||||||||||||||| ||||||||||    
T  41957262 ccctatattaattactcttgattacaccaaaagacttacttttaatattctttctcataata 41957323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 164 - 343
Target Start/End: Original strand, 50150325 - 50150505
Alignment:
Q  164 gaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaac 262  Q
    ||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  50150325 gaatacccttaaattaattactttttattccatcaacttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcaaac 50150424  T
Q  263 atacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    ||||||||||||| ||| ||||||||||||| || |||||||||  | || ||||||||| |||||||| |||| ||||||    
T  50150425 atacttaaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcccttttgtttctaataaaaaggaccggaggg 50150505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 169 - 331
Target Start/End: Original strand, 30537645 - 30537807
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  30537645 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 30537744  T
Q  269 aaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 331  Q
     ||||||  || ||||||||||||| || || |||||| || |||||||||||| ||| ||||    
T  30537745 gaaacttggtcaatcttcttataaaaaggacaaaaaaaaatctcacttttgtttctaacaaaa 30537807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 161 - 342
Target Start/End: Original strand, 43034135 - 43034317
Alignment:
Q  161 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 259  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  43034135 tatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 43034234  T
Q  260 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
    |||||| || |||||| ||| ||||||||||||| || |||||||||  | |||||||||||| |||||||| |||| |||||    
T  43034235 aacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagg 43034317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 169 - 343
Target Start/End: Complemental strand, 26877342 - 26877167
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26877342 ccctaaattaattactctttattccaccaacttacttacttttaatattctatctcataataaataaggacacaaatgaaatttagcttcaaacatactt 26877243  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    |||| ||  || ||  |||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  26877242 aaaatttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 26877167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 169 - 342
Target Start/End: Complemental strand, 782972 - 782798
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  782972 ccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaaagaaatttagcttcaaacatactt 782873  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
     ||||||  || ||  |||||||||| || || |||||| || |||||||||||| |||||||| |||| |||||    
T  782872 gaaacttggtcaatatttcttataaaaaggacaaaaaaaaatatcacttttgtttctaataaaaaggaccggagg 782798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 169 - 342
Target Start/End: Complemental strand, 36187498 - 36187324
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||    
T  36187498 ccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaatatactt 36187399  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
     ||||||  |  ||  |||||||||| || ||||||||| | ||||||||||||| |||||||| |||| |||||    
T  36187398 gaaacttggttaatatttcttataaaaaggaccaaaaaaaaattcacttttgtttctaataaaaaggaccggagg 36187324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 162 - 341
Target Start/End: Complemental strand, 25934526 - 25934347
Alignment:
Q  162 atgaataccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaa 261  Q
    |||||||||||||||||||| ||||||||||||| |||||| ||| ||||||| |||||||||||||||||||| | ||||||||||||||| |||||||    
T  25934526 atgaataccctaaattaattcctctttattccactaacttatttatttttaattttctctctcataataaataagggcacaaatgaaatttatcttcaaa 25934427  T
Q  262 catacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggag 341  Q
    ||||||| ||||||  || ||||||||||||| || || ||||||  | |||||||||||| |||||||| |||| ||||    
T  25934426 catacttgaaacttggtcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggag 25934347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 169 - 343
Target Start/End: Complemental strand, 27627930 - 27627757
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  27627930 ccctaaattaattactctttattccaccaacttacttacttttaatattc--tctcataataaataagggcacaaatgaaatttagcttcaaacatactt 27627833  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
     ||||||  || ||  |||||||||| || | |||||||  || ||||||||||| |||||||| |||| ||||||    
T  27627832 gaaacttggtcaatatttcttataaaaaggatcaaaaaaatttccacttttgtttctaataaaaaggaccggaggg 27627757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 162 - 336
Target Start/End: Complemental strand, 3067914 - 3067740
Alignment:
Q  162 atgaatacc-ctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 260  Q
    ||||||||| |||||||||||  ||||||||| || |||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||    
T  3067914 atgaatacctctaaattaattcttctttattctactaacttatttacttttaattttctctctcataataaataagggcacaaatgaaatttagcttcaa 3067815  T
Q  261 acatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggac 336  Q
    |||||||| ||||||  || ||||||||||||| || || ||||||  | |||||||| ||| |||||||| ||||    
T  3067814 acatacttgaaacttggtcaatcttcttataaaaaggacaaaaaaaattctcactttt-tttctaataaaaaggac 3067740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 172 - 291
Target Start/End: Complemental strand, 33313406 - 33313287
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    ||||||||||  |||||||||||| |||||| ||||||||||| |||||||||||||||||||| | ||||||| |||||||  || ||||||| |||||    
T  33313406 taaattaattcatctttattccactaacttatttacttttaattttctctctcataataaataagggcacaaataaaatttatatttaaacatatttaaa 33313307  T
Q  272 acttaatcgatcttcttata 291  Q
    ||||  |  |||||||||||    
T  33313306 acttggttaatcttcttata 33313287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 56551489 - 56551573
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagctt 257  Q
    ||||| ||||||||||||| ||||||| ||||| |||    ||| |||||||||| ||||||| ||| | |||||||||||||||||||    
T  56551489 ccctatattaattactcttaattccacaaacttgctt----ttagtattctctctaataataattaagggcacaaatgaaatttagctt 56551573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 29989779 - 29989703
Alignment:
Q  176 ttaattactctttattccaccaacttacttacttttaatattctctctca-taataaataaagacacaaatgaaatt 251  Q
    |||||||||||| |||| |  |||| ||||||||||||||||||||| || ||||||||||  |||||| |||||||    
T  29989779 ttaattactcttaattctaataactaacttacttttaatattctctcccagtaataaataagaacacaagtgaaatt 29989703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 44538441 - 44538509
Alignment:
Q  183 ctctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatt 251  Q
    ||||| |||||||||| ||| |||||||||||||||| | |||| ||||||||||  | ||||||||||    
T  44538441 ctcttaattccaccaatttatttacttttaatattctatttcatgataaataaaggtataaatgaaatt 44538509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 161 - 343
Target Start/End: Complemental strand, 24989901 - 24989718
Alignment:
Q  161 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 259  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  24989901 tatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 24989802  T
Q  260 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    ||||||||| |||||| ||| ||||||| ||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  24989801 aacatacttgaaacttgatcaatcttctaataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 24989718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 172 - 342
Target Start/End: Complemental strand, 8417834 - 8417664
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||||||||||| ||    
T  8417834 taaattaattactctttattccatcaacttacttacttttaatattatctctcataattaataagggcacaaatgaaatttagcttcaaacatacttgaa 8417735  T
Q  272 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
    |||| ||| ||||||||||||| || || ||||||  | |||||||||||| |||||||| |||| |||||    
T  8417734 acttgatcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggagg 8417664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 169 - 293
Target Start/End: Original strand, 7568193 - 7568317
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||    
T  7568193 ccctaaattaattactctttattccaccaacttacttacttttaatattctctttcataataaataagggcacaaatgaaatttaccttcaaacatactt 7568292  T
Q  269 aaaacttaatcgatcttcttataaa 293  Q
     |||||| ||| |||||||||||||    
T  7568293 gaaacttgatcaatcttcttataaa 7568317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 169 - 331
Target Start/End: Original strand, 23319990 - 23320153
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  23319990 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 23320089  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 331  Q
     ||||||  || ||  |||||||||| |  ||||| ||| || | | |||||||||||||||||    
T  23320090 gaaacttggtcaatatttcttataaaaatgaccaacaaaaatctaatttttgtttttaataaaa 23320153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 169 - 343
Target Start/End: Original strand, 48394177 - 48394350
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||| | |||||||||||||||| |||||||||||||    
T  48394177 ccctaaattaattactctttattccaccaacttacttacttttaatat--tctttcataataaataagggcacaaatgaaatttagtttcaaacatactt 48394274  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    |||||||  || ||  |||||||||| || || |||||| | ||||||||||||| |||||||| |||| ||||||    
T  48394275 aaaacttggtcaatatttcttataaaaaggacaaaaaaaaaattcacttttgtttctaataaaaaggaccggaggg 48394350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 169 - 331
Target Start/End: Complemental strand, 18674682 - 18674519
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||    
T  18674682 ccctaaattaattactctttattccaccaacttacttattttcaatattctctcttataataaataagggcacaaatgaaatttagcttcaaacatactt 18674583  T
Q  269 aaaacttaatcgatcttcttataaagagaac-caaaaaatatttcacttttgtttttaataaaa 331  Q
     ||||||  || || |||||||||| || ||  |||||| || |||||||||||| ||||||||    
T  18674582 gaaacttggtcaattttcttataaaaaggacaaaaaaaaaatctcacttttgtttctaataaaa 18674519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 169 - 342
Target Start/End: Original strand, 48390334 - 48390508
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    |||||||||||||| | |||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  48390334 ccctaaattaattattttttatttcatcaacttacttacttttaatattctcactcataataaataaggacacaaatgaaatttagcttcaaacatactt 48390433  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
     ||||||  || ||  |||||||||| || |  |||||| | ||||||||||||| |||||||| |||| |||||    
T  48390434 gaaacttggtcaatatttcttataaaaaggataaaaaaaaaattcacttttgtttctaataaaaaggaccggagg 48390508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 41851018 - 41851135
Alignment:
Q  159 tttatgaataccc-taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagctt 257  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||    
T  41851018 tttatgaatacccctaaattaattactctttattccaccaactcacttacttttaatattctctctcataataaataagggtacaaatgaaatttagttt 41851117  T
Q  258 caaacatacttaaaactt 275  Q
    ||||||||||| ||||||    
T  41851118 caaacatacttgaaactt 41851135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 46437539 - 46437447
Alignment:
Q  7 gtgagaagaaagacgattgtgaattgtgatttgtgagaagagaagaagaaaccgattgtttgtgagagt--agaggaggagaagaaacaacgc 97  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  46437539 gtgagaagaaagacgattgtgaattgtgttttgtgagaagagaagaagaaaccgattgtttgtgagagtaaagaagaggagaagaaacaacgc 46437447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 161 - 285
Target Start/End: Complemental strand, 45062643 - 45062518
Alignment:
Q  161 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 259  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || || | |||| |||||||||||||| |    
T  45062643 tatgaatacccttaaattaattactttttattccatcaacttacttacttttaatattctctctcataatcaacaagggcacagatgaaatttagcttta 45062544  T
Q  260 aacatacttaaaacttaatcgatctt 285  Q
    |||||| || |||||| ||| |||||    
T  45062543 aacatatttgaaacttgatcaatctt 45062518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 965166 - 965222
Alignment:
Q  197 aacttacttacttttaatattctctctcataataaataaagacacaaatgaaattta 253  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||| ||||||||    
T  965166 aacttacttacttttaatattctttctcataataaataagaacacaaacgaaattta 965222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 161 - 343
Target Start/End: Complemental strand, 54748178 - 54747995
Alignment:
Q  161 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 259  Q
    |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  54748178 tatgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 54748079  T
Q  260 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    ||||||||| |||||| ||| ||||||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  54748078 aacatacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 54747995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 161 - 343
Target Start/End: Original strand, 25095992 - 25096175
Alignment:
Q  161 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 259  Q
    |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  25095992 tatgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 25096091  T
Q  260 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    ||||||||| ||| || ||| ||||||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  25096092 aacatacttgaaatttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 25096175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 172 - 343
Target Start/End: Original strand, 26848177 - 26848348
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||||||||||| ||    
T  26848177 taaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaaagaaatttagcttcaaacatacttgaa 26848276  T
Q  272 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    |||| ||| ||||||||||||| |  |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  26848277 acttgatcaatcttcttataaaaatgaccaaaaaaattctcacttttgtttataataaaaaggaccggaggg 26848348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 169 - 343
Target Start/End: Original strand, 35613033 - 35613208
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  35613033 ccctaaattaattactctttattccaccaacttatttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 35613132  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
     ||||||  || ||  |||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  35613133 gaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 35613208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 161 - 343
Target Start/End: Complemental strand, 25313552 - 25313368
Alignment:
Q  161 tatgaataccc-taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 259  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  25313552 tatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttca 25313453  T
Q  260 aacatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    ||||||||| ||||||  || ||  |||||||||| || ||| |||||  | |||||||||||| |||||||| |||| ||||||    
T  25313452 aacatacttgaaacttggtcaatatttcttataaaaaggacccaaaaaattctcacttttgtttctaataaaaaggaccggaggg 25313368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 162 - 343
Target Start/End: Complemental strand, 50834194 - 50834011
Alignment:
Q  162 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 260  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  50834194 atgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcaa 50834095  T
Q  261 acatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    |||||||| ||||||  || ||  |||||||||| || |||||||||  | |||||||||||  |||||||| |||| ||||||    
T  50834094 acatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgttcctaataaaaaggaccggaggg 50834011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 162 - 343
Target Start/End: Original strand, 50841659 - 50841842
Alignment:
Q  162 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 260  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  50841659 atgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcaa 50841758  T
Q  261 acatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    |||||||| ||||||  || ||  |||||||||| || |||||||||  | |||||||||||  |||||||| |||| ||||||    
T  50841759 acatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgttcctaataaaaaggaccggaggg 50841842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 172 - 331
Target Start/End: Complemental strand, 22515815 - 22515655
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| ||    
T  22515815 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttgaa 22515716  T
Q  272 acttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 331  Q
    ||||  || ||  |||||||||| || ||||||||  |||||| |||||||| ||||||||    
T  22515715 acttggtcaatatttcttataaaaaggaccaaaaagaatttcagttttgtttctaataaaa 22515655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 169 - 293
Target Start/End: Original strand, 48905648 - 48905772
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  48905648 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttaccttcaaacatactt 48905747  T
Q  269 aaaacttaatcgatcttcttataaa 293  Q
     ||||||  || |||||||||||||    
T  48905748 gaaacttggtcaatcttcttataaa 48905772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 169 - 331
Target Start/End: Original strand, 20922788 - 20922951
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||  ||||||    
T  20922788 ccctaaattaattattttttattccaccaacttacttacttttaatattctctctcataataaataagagcacaaatgaaatttagcttcaagaatactt 20922887  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 331  Q
     ||||||  || ||  |||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  20922888 gaaacttggtcaatatttcttataaaaagaaccaaaaaaaatttcacttttgtttctaataaaa 20922951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 169 - 343
Target Start/End: Complemental strand, 46320613 - 46320438
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||| ||||||||||||||    
T  46320613 ccctaaattaattactctttatttcaccaacttacttacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatactt 46320514  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    |||||||  || ||  |||||||||| || ||| |||||  | |||||||||||| |||||||| |||| ||||||    
T  46320513 aaaacttggtcaatatttcttataaaaaggacctaaaaaattctcacttttgtttctaataaaaaggaccggaggg 46320438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 169 - 342
Target Start/End: Original strand, 23026300 - 23026474
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  23026300 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttaacttcaaacatactt 23026399  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
     ||| || ||| ||  |||||||||| |  |||||||||  | |||||||||||| |||||||| |||| |||||    
T  23026400 gaaattttatcaatatttcttataaaaatgaccaaaaaaattctcacttttgtttctaataaaaaggaccggagg 23026474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 169 - 293
Target Start/End: Original strand, 9663920 - 9664041
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||||||||||||| |||||||||| |||    
T  9663920 ccctaaattaattactctttattccaccaacttacttacttttaatat--tctctcataataaataagggcacaaatgaaatttaccttcaaacat-ctt 9664016  T
Q  269 aaaacttaatcgatcttcttataaa 293  Q
     ||||||  || |||||||||||||    
T  9664017 gaaacttggtcaatcttcttataaa 9664041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 169 - 343
Target Start/End: Original strand, 49794971 - 49795147
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||| |||||||||    
T  49794971 cccttaattaattactctttattccaccaacttacttacttttaatattttctctcataataaataagagtacaaatgaaatttagcttc-aacatactt 49795069  T
Q  269 aaaacttaatcgat-cttcttataaagag-aaccaaaaaatatt-tcacttttgtttttaataaaagggacaggaggg 343  Q
     |||||| ||| ||  |||||||||| || ||  |||||| ||| |||||||||||| |||||||| |||| ||||||    
T  49795070 gaaacttgatcaatatttcttataaaaagaaaaaaaaaaagattctcacttttgtttctaataaaaaggaccggaggg 49795147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 26555702 - 26555618
Alignment:
Q  7 gtgagaagaaagacgattgtgaattgtgatttgtgagaagagaagaagaaaccgattgtttgtgagagtagaggaggagaagaaaca 93  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  || ||||  ||| ||||||||||||||    
T  26555702 gtgagaagaaagaagattgtgaattgtgatttgtgagaagagaagaagaaaccgattg--tgagagaagagaagaggagaagaaaca 26555618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 52118521 - 52118463
Alignment:
Q  7 gtgagaagaaagacgattgtgaattgtgatttgtgagaagagaagaagaaaccgattgt 65  Q
    |||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  52118521 gtgagaggaaaggagattgtgaattgtgatttgtgagaagagaagaagaaaccgattgt 52118463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 33280335 - 33280416
Alignment:
Q  170 cctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatt 251  Q
    |||| ||||| ||||||| ||||||  |||  ||||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  33280335 cctatattaactactcttaattccaataaccaacttacttttaatattctctctcgtaataaataagaacacaaatgaaatt 33280416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 32619396 - 32619323
Alignment:
Q  174 aattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatga 247  Q
    |||||||||||||| | ||||  |||| |||||||||| ||||| |||||| |||||||||||||||| |||||    
T  32619396 aattaattactcttaactccaataactaacttacttttgatattgtctctcgtaataaataaagacacgaatga 32619323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 31612861 - 31612906
Alignment:
Q  204 ttacttttaatattctctctcataataaataaagacacaaatgaaa 249  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||||    
T  31612861 ttacttttaatattctctctcataatgaataaggacacagatgaaa 31612906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 170 - 343
Target Start/End: Complemental strand, 33314506 - 33314333
Alignment:
Q  170 cctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactta 269  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| ||     
T  33314506 cctaaattaattactctttattccaccaacttgcttacttttaatattctctctcataataaatgagggcacaaatgaaatttagcttcaaacatatttg 33314407  T
Q  270 aaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    |||||| ||| ||||||||||||| || ||||||||  || |||||||||||| |||||||| |||| ||||||    
T  33314406 aaacttgatcaatcttcttataaaaaggaccaaaaataatctcacttttgtttataataaaaaggactggaggg 33314333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 172 - 343
Target Start/End: Original strand, 21262915 - 21263086
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||  | | |||||||||||||||||||||||||||| ||    
T  21262915 taaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaatatgggcgcaaatgaaatttagcttcaaacatacttgaa 21263014  T
Q  272 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    |||| ||| ||||||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  21263015 acttgatcaatcttcttataaaaaggaccaaaaaaattatcacttttgtttctaataaaaaggaccggaggg 21263086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 169 - 342
Target Start/End: Original strand, 40385249 - 40385425
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  40385249 ccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 40385348  T
Q  269 aaaacttaatcga---tcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
     ||||||  || |   |||||||||||| || |||||||||  | |||||||||||| |||||||| |||| |||||    
T  40385349 gaaacttggtcaatcttcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagg 40385425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 169 - 343
Target Start/End: Original strand, 3097565 - 3097740
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||| | ||||||||||||| |||||| ||||||||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||    
T  3097565 ccctaaattaaatcctctttattccactaacttatttacttttaattttcactctcataataaataagggcacaaatgaaatttagcttcaaacatactt 3097664  T
Q  269 aaaacttaatcgatcttcttataaagagaac-caaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
     ||||||  || ||||||||||||| || ||  |||||| || |||||||||||| |||||||| |||| ||||||    
T  3097665 gaaacttggtcaatcttcttataaaaaggacaaaaaaaaaatctcacttttgtttctaataaaaaggaccggaggg 3097740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 169 - 331
Target Start/End: Complemental strand, 24868646 - 24868483
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||| ||||||||||||||    
T  24868646 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatactt 24868547  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 331  Q
     ||||||  || ||  |||||||||| |  || ||||||  | |||||||||||| ||||||||    
T  24868546 gaaacttggtcaatatttcttataaaaaagacaaaaaaaattctcacttttgtttctaataaaa 24868483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 169 - 343
Target Start/End: Original strand, 41174675 - 41174849
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    |||| |||||||| ||||||||| ||| |||||| ||||||||||  |||||||||||||||||||| | ||||||||||||||||||| ||| ||||||    
T  41174675 ccctcaattaattcctctttatttcactaacttatttacttttaactttctctctcataataaataagggcacaaatgaaatttagcttaaaatatactt 41174774  T
Q  269 aaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
     ||||||  || ||||||||||||| || |||||||||  | |||||||||||| || ||||| |||| ||||||    
T  41174775 gaaacttggtcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctattaaaaaggaccggaggg 41174849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 4238031 - 4237936
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacat 264  Q
    ||||||||||||||||||| |||||||||| ||||||  ||||| |||||| ||||||||||||||| | ||||||||||||||| ||||||||||    
T  4238031 ccctaaattaattactcttgattccaccaatttacttcattttattattctatctcataataaataacggcacaaatgaaatttaacttcaaacat 4237936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 424679 - 424735
Alignment:
Q  37 ttgtgagaagagaagaagaaaccgattgtttgtgagagtagaggaggagaagaaacaa 94  Q
    |||||| |||||||||||||||||||||||||||||||| || || ||||||||||||    
T  424679 ttgtgaaaagagaagaagaaaccgattgtttgtgagagttga-gaagagaagaaacaa 424735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 18113674 - 18113730
Alignment:
Q  37 ttgtgagaagagaagaagaaaccgattgtttgtgagagtagaggaggagaagaaacaa 94  Q
    |||||| ||||||||||||||| ||||||||||||||||||| || ||||||||||||    
T  18113674 ttgtgaaaagagaagaagaaacagattgtttgtgagagtaga-gaagagaagaaacaa 18113730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 2934903 - 2935006
Alignment:
Q  170 cctaaattaattactctttattccaccaacttacttactttt-aatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||| || |||||  ||| ||| |||||||| ||||  |||||||||||||||||| |  | |||||||||||| ||||||| | ||||    
T  2934903 cctaaattaattacttttgattccggcaatttatttactttttaataacctctctcataataaataagggtataaatgaaatttaacttcaaatacactt 2935002  T
Q  269 aaaa 272  Q
    ||||    
T  2935003 aaaa 2935006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 17074769 - 17074734
Alignment:
Q  23 ttgtgaattgtgatttgtgagaagagaagaagaaac 58  Q
    ||||||||||||||||||||||||| ||||||||||    
T  17074769 ttgtgaattgtgatttgtgagaagataagaagaaac 17074734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 2355977 - 2356023
Alignment:
Q  207 cttttaatattctctctcataataaataaagacacaaatgaaattta 253  Q
    |||||| |||||||||||||| |||||||  ||||||||||||||||    
T  2355977 cttttagtattctctctcatactaaataattacacaaatgaaattta 2356023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 2356062 - 2356108
Alignment:
Q  207 cttttaatattctctctcataataaataaagacacaaatgaaattta 253  Q
    |||||| |||||||||||||| |||||||  ||||||||||||||||    
T  2356062 cttttagtattctctctcatactaaataattacacaaatgaaattta 2356108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 18471680 - 18471608
Alignment:
Q  175 attaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatga 247  Q
    ||||||||||||| ||| ||  || | |||||||||||||||| |||||  |||||||||| |||||| ||||    
T  18471680 attaattactcttaatttcaataattaacttacttttaatattgtctcttgtaataaataaggacacatatga 18471608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 5e-54; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 161 - 343
Target Start/End: Complemental strand, 10448906 - 10448723
Alignment:
Q  161 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 259  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||   ||||||||||||||| |||||    
T  10448906 tatgaatacccttaaattaattactatttattccatcaacttacttacttttaatattctctctcataatcaataagagcacaaatgaaatttaacttca 10448807  T
Q  260 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    ||||||||| |||||| ||| |||||||||||||||| |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  10448806 aacatacttgaaacttgatcaatcttcttataaagaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 10448723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 161 - 343
Target Start/End: Complemental strand, 11964338 - 11964155
Alignment:
Q  161 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 259  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  11964338 tatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 11964239  T
Q  260 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    |||||| || |||||| ||| ||||||||||||| || |||||||||  | |||||||||||| ||||| || |||| ||||||    
T  11964238 aacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaatagaaaggaccggaggg 11964155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 162 - 331
Target Start/End: Original strand, 39778658 - 39778829
Alignment:
Q  162 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 260  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  39778658 atgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaa 39778757  T
Q  261 acatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 331  Q
    |||||||| ||||||  || ||  |||||||||| || |||||||||  |||||||||||||| ||||||||    
T  39778758 acatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaa 39778829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 169 - 342
Target Start/End: Original strand, 36191590 - 36191763
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  36191590 ccctaaattaattactctttattccac-aacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 36191688  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
     ||||||| || ||  |||||||||| || ||||||||| || |||||||||||| |||||||| |||| |||||    
T  36191689 gaaacttagtcaatatttcttataaaaaggaccaaaaaaaatctcacttttgtttctaataaaaaggaccggagg 36191763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 169 - 343
Target Start/End: Original strand, 19926801 - 19926974
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | |||||||||||||||| |||||||||||||    
T  19926801 ccctaaattaattactctttattccaccaacttacttacttttaatat--tctctcataataaataagggcacaaatgaaatttagtttcaaacatactt 19926898  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    |||||||  || ||  |||||||||| || ||||||||| ||||||||||||||| |||||||| |||| ||||||    
T  19926899 aaaacttggtcaatatttcttataaaaaggaccaaaaaaaatttcacttttgtttctaataaaaaggaccggaggg 19926974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 169 - 343
Target Start/End: Original strand, 10728307 - 10728482
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||    
T  10728307 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcataaatgaaatttagcttcaaacatactt 10728406  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
     ||||||  || ||  |||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  10728407 gaaactttgtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 10728482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 172 - 342
Target Start/End: Original strand, 21345098 - 21345265
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    ||||||||||||||||||||||| |||||||||||||||||||  ||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||    
T  21345098 taaattaattactctttattccatcaacttacttacttttaat--tctctctcacaatcaataaggacacaaatgaaatttagcttcaaacatacttgaa 21345195  T
Q  272 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
    |||| ||| ||||||||||||| || |||||||||| | |||||||||||| |||||||| |||| |||||    
T  21345196 acttgatcaatcttcttataaaaaggaccaaaaaat-tctcacttttgtttctaataaaaaggaccggagg 21345265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 164 - 331
Target Start/End: Original strand, 22066384 - 22066552
Alignment:
Q  164 gaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaac 262  Q
    ||||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||    
T  22066384 gaatacccttaaattaattactttttattccatcaactaacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagctttaaac 22066483  T
Q  263 atacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 331  Q
    |||||| |||||| ||| ||||||||||||| || |||||||||  | |||||||||||| ||||||||    
T  22066484 atacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaa 22066552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 162 - 341
Target Start/End: Original strand, 41435615 - 41435795
Alignment:
Q  162 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 260  Q
    ||||||||||| ||||||||||||||||||| || ||||||| |||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||    
T  41435615 atgaatacccttaaattaattactctttatttcatcaacttatttacttttaatattctatctcataatcaataagggcacaaatgaaatttagcttcaa 41435714  T
Q  261 acatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggag 341  Q
    |||||||| |||||| ||| ||||| ||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||    
T  41435715 acatacttgaaacttgatcaatcttattataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggag 41435795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 156 - 341
Target Start/End: Original strand, 13693530 - 13693716
Alignment:
Q  156 atatttatgaataccc-taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttag 254  Q
    ||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||| ||||||||||||     
T  13693530 atattcatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataataaataaggacagaaatgaaatttat 13693629  T
Q  255 cttcaaacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggag 341  Q
    ||| |||||||||| ||||||  || ||||||||||||| || |||||||||  | |||||||||||| |||||||| |||| ||||    
T  13693630 ctttaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggag 13693716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 172 - 336
Target Start/End: Complemental strand, 25187114 - 25186950
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| ||    
T  25187114 taaattaattactcttaattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttgaa 25187015  T
Q  272 acttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggac 336  Q
    ||||  || ||  |||||||||| |  ||||||||| ||||||||||||||| |||||||| ||||    
T  25187014 acttggtcaatatttcttataaaaatgaccaaaaaa-atttcacttttgtttctaataaaaaggac 25186950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 169 - 342
Target Start/End: Original strand, 42993820 - 42993994
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| |||||| | ||||||||||||||| ||||||||||||||    
T  42993820 ccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataacaaataagggcacaaatgaaatttatcttcaaacatactt 42993919  T
Q  269 aaaacttaatcgatcttcttataaagagaaccaaaaaatatt-tcacttttgtttttaataaaagggacaggagg 342  Q
     ||| ||  || ||||||||||||| || ||||||||| ||| |||||||||||| |||||||| |||| |||||    
T  42993920 gaaatttggtcaatcttcttataaaaaggaccaaaaaaaattctcacttttgtttctaataaaaaggaccggagg 42993994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 169 - 293
Target Start/End: Complemental strand, 7105732 - 7105608
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||| |||||||    
T  7105732 ccctaaattaattactctttattccaccaacttacttacttttaatattttctctcataataaataagggcacaaatgaaatttaccttcaagcatactt 7105633  T
Q  269 aaaacttaatcgatcttcttataaa 293  Q
     ||||||  || |||||||||||||    
T  7105632 gaaacttggtcaatcttcttataaa 7105608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 169 - 336
Target Start/End: Complemental strand, 28831137 - 28830969
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  28831137 ccctaaattaattactctttattgcaccaatttacttacttttaatattttctctcataataaataaggacacaaatgaaatttaacttcaaacatactt 28831038  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggac 336  Q
    |||| ||  || ||  |||||||||| || |||||||||  | | |||||| ||| |||||||| ||||    
T  28831037 aaaatttggtcaatatttcttataaaaaggaccaaaaaaattcttacttttatttctaataaaatggac 28830969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 169 - 331
Target Start/End: Original strand, 10700238 - 10700401
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||    
T  10700238 ccctaaattaattactctttattccaccaacttatttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcagacatactt 10700337  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 331  Q
     ||||||  || ||  |||||||||| |  || ||||||  | |||||||||||| ||||||||    
T  10700338 gaaacttggtcaatatttcttataaaaaagactaaaaaaattctcacttttgtttctaataaaa 10700401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 16916258 - 16916347
Alignment:
Q  7 gtgagaagaaagacgattgtgaattgtgatttgtgagaagagaagaagaaaccgattgtttgtgagagtagag--gaggagaagaaacaa 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  16916258 gtgagaagaaagacgattgtgaattgtgatttgtgagaagagaagaagaaaccgattgtttgtgagagtagagaaaaggagaagaaacaa 16916347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 209 - 343
Target Start/End: Complemental strand, 41462805 - 41462670
Alignment:
Q  209 tttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaat 307  Q
    |||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||  || ||  |||||||||| || ||| |||||     
T  41462805 tttattattctctctcataataaataagggcacaaatgaaatttaacttcaaacatatttaaaacttggtcaatatttcttataaaaaggacctaaaaaa 41462706  T
Q  308 atttcacttttgtttttaataaaagggacaggaggg 343  Q
     | |||||||||||| |||||||| |||| ||||||    
T  41462705 ttctcacttttgtttctaataaaaaggactggaggg 41462670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 16621989 - 16622053
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataa 235  Q
    ||||| |||||||||||||  ||| ||||||||||||| |||||||||  |||||||||||||||||    
T  16621989 ccctatattaattactcttatttctaccaacttacttatttttaatat--tctctcataataaataa 16622053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 45695655 - 45695721
Alignment:
Q  175 attaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacaca 242  Q
    |||||||||| || || ||||||| ||||||||| |||| |||||||| |||||||||||||||||||    
T  45695655 attaattacttttcatcccaccaatttacttactcttaa-attctctcccataataaataaagacaca 45695721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 16916383 - 16916417
Alignment:
Q  130 aatttccactttccttcccgtgccttatatttatg 164  Q
    |||||||||||||||||||||||||||| ||||||    
T  16916383 aatttccactttccttcccgtgccttatgtttatg 16916417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 169 - 342
Target Start/End: Complemental strand, 32305887 - 32305713
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  32305887 ccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatactt 32305788  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
     ||||||  || ||  |||||||||| || |||||||||  |||||||||||||| |||||||| |||| |||||    
T  32305787 gaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaaaggaccggagg 32305713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 158 - 336
Target Start/End: Complemental strand, 8669924 - 8669746
Alignment:
Q  158 atttatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagct 256  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||    
T  8669924 atttatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttaact 8669825  T
Q  257 tcaaacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggac 336  Q
    |||||||||||| |||||| ||| ||||||||||||| || | ||||||| || |||||||| ||| |||||||| ||||    
T  8669824 tcaaacatacttgaaacttgatcaatcttcttataaaaagga-caaaaaaaatctcacttttatttctaataaaaaggac 8669746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 161 - 342
Target Start/End: Complemental strand, 13882272 - 13882091
Alignment:
Q  161 tatgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 259  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| | |||||||||||||||||||||    
T  13882272 tatgaatacccttaaattaattactctttattccatcaacttacttacttt-aatattctctctcataatcaataagggcacaaatgaaatttagcttca 13882174  T
Q  260 aacatacttaaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
    |||||| || |||||| ||| ||||||||||||| || |||||||||  | |||||||| ||| |||||||| |||| |||||    
T  13882173 aacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttatttctaataaaaaggaccggagg 13882091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 169 - 342
Target Start/End: Complemental strand, 8107072 - 8106899
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||    
T  8107072 ccctaaattaattcctctttattccactaacttatttacttttaattttctatctcataataaataaggacacaaatgaaatttagtttcaaacatactt 8106973  T
Q  269 aaaacttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggagg 342  Q
     ||||||  || ||||||||||||| || | |||||||  | ||| |||||||| |||||||| |||| |||||    
T  8106972 gaaacttggtcaatcttcttataaaaaggatcaaaaaaattctcatttttgtttctaataaaaaggaccggagg 8106899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 172 - 336
Target Start/End: Complemental strand, 29226451 - 29226288
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||  ||||||| ||||| | |||||||||||||||||||||||||||||| ||    
T  29226451 taaattaattactctttattccatcaacttacttacttttaatattttcattcataatcaataagg-cacaaatgaaatttagcttcaaacatacttgaa 29226353  T
Q  272 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggac 336  Q
    |||| ||| ||||||||||||| || | |||||||  | |||||||||||| |||||||| ||||    
T  29226352 acttgatcaatcttcttataaaaaggaacaaaaaaattctcacttttgtttctaataaaaaggac 29226288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 168 - 331
Target Start/End: Original strand, 35634804 - 35634968
Alignment:
Q  168 accctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatact 267  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  35634804 accctaaattaattactctttatcgcaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatact 35634903  T
Q  268 taaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 331  Q
    | ||||||  || ||  |||||||||| |  || ||||||  | |||||||||||| ||||||||    
T  35634904 tgaaacttggtcaatatttcttataaaaatgacaaaaaaaattctcacttttgtttataataaaa 35634968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 172 - 331
Target Start/End: Complemental strand, 37533942 - 37533783
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| | |||||| |||||||| ||||||| ||| || ||    
T  37533942 taaattaattactctttattccatcaacttacttatttttaatattctctctcataatcaataagggcacaaacgaaatttaacttcaaatatatttgaa 37533843  T
Q  272 acttaatcgatcttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaa 331  Q
    |||| ||| ||||||| ||||| || | |||||||  | |||||||||||| ||||||||    
T  37533842 acttgatcaatcttctaataaaaaggatcaaaaaaattctcacttttgtttataataaaa 37533783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 42570090 - 42569975
Alignment:
Q  161 tatgaata-ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttca 259  Q
    |||||||| |||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  42570090 tatgaatatccctaaattaattactatttatttcatcaacttacttatttttaatattctctctcataataaataaatgcacaaataaaatttagcttca 42569991  T
Q  260 aacatacttaaaactt 275  Q
    |  |||||||||||||    
T  42569990 atgatacttaaaactt 42569975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 36741715 - 36741806
Alignment:
Q  175 attaattactctttattccaccaacttacttacttttaatattctctc---tcataataaataaagacacaaatgaaatttagcttcaaaca 263  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||   | ||||||||||| |||||||||||||||||||||| ||||    
T  36741715 attaattactcttaattccactaacttacttacttttaatattctctctaataataataaataaggacacaaatgaaatttagcttctaaca 36741806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 28535389 - 28535305
Alignment:
Q  7 gtgagaagaaagacgattgtgaattgtgatttgtgagaagagaagaagaaaccgattgtttgtgagagtagag--gaggagaagaaaca 93  Q
    ||||||||||||  ||||||||||||||||||||||||||||| |||||||||||    ||||||||||||||  ||||||||||||||    
T  28535389 gtgagaagaaaggagattgtgaattgtgatttgtgagaagagaggaagaaaccga----ttgtgagagtagagaagaggagaagaaaca 28535305  T

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Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 272
Target Start/End: Complemental strand, 17855527 - 17855424
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    |||||||||||||||| ||   ||||  |||||| |||||||||||| | | |||||| |||||||| || ||||||||||||||| ||| |||| ||||    
T  17855527 ccctaaattaattactattgcctccattaacttaattacttttaatactatttctcatcataaataaggatacaaatgaaatttagtttccaacacactt 17855428  T
Q  269 aaaa 272  Q
    ||||    
T  17855427 aaaa 17855424  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 31598740 - 31598688
Alignment:
Q  179 attactctttattccaccaacttacttacttttaatattctctctcataataa 231  Q
    |||||| || |||| || |||||| ||||||||||||||||||||||||||||    
T  31598740 attactattaattctactaacttaattacttttaatattctctctcataataa 31598688  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 32026810 - 32026755
Alignment:
Q  178 aattactctttattccaccaacttacttacttttaatattctctctcataataaat 233  Q
    |||||||||  ||| |||||| |||| ||||||||||||||||||||| |||||||    
T  32026810 aattactctggattacaccaatttacatacttttaatattctctctcacaataaat 32026755  T

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Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 168 - 343
Target Start/End: Original strand, 24338025 - 24338201
Alignment:
Q  168 accctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatact 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  24338025 accctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatact 24338124  T
Q  268 taaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    | ||||||  || ||  |||||||||| |  |||||||||  | |||||||||||| |||||||| |||| ||||||    
T  24338125 tgaaacttggtcaatatttcttataaaaaagaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggg 24338201  T

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Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 162 - 343
Target Start/End: Complemental strand, 1365832 - 1365649
Alignment:
Q  162 atgaataccct-aaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaa 260  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  1365832 atgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaa 1365733  T
Q  261 acatacttaaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggacaggaggg 343  Q
    |||||||| ||||||  || ||  |||||||||| || ||||| |||  | |||||||||||| |||||||| |||| ||||||    
T  1365732 acatacttgaaacttggtcaatatttcttataaaaaggaccaacaaaattctcacttttgtttctaataaaaaggaccggaggg 1365649  T

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Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 169 - 336
Target Start/End: Original strand, 7243430 - 7243598
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  7243430 ccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttaacttcaaacatactt 7243529  T
Q  269 aaaacttaatcgat-cttcttataaagagaaccaaaaaatatttcacttttgtttttaataaaagggac 336  Q
     ||||||  || ||  |||||||||| |  |||||||||  | |||||||||||| |||||||| ||||    
T  7243530 gaaacttggtcaatatttcttataaaaaagaccaaaaaagttctcacttttgtttataataaaaaggac 7243598  T

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Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 5013972 - 5014064
Alignment:
Q  7 gtgagaagaaagacgattgtgaattgtgatttgtgagaagagaagaagaaaccgattgtttgtgagagtagag--gaggagaagaaacaacgc 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||    
T  5013972 gtgagaagaaagacgattgtgaattgtgatttgtgagaagagaagaagaaatcgattgtttgtgagagtagagaagaggagaagaaacaacgc 5014064  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 16693195 - 16693112
Alignment:
Q  7 gtgagaagaaagacgattgtgaattgtgatttgtgagaagagaagaagaaaccgattgtttgtgagagtagag--gaggagaagaaac 92  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||    ||||||||||||||  |||||||||||||    
T  16693195 gtgagaagaaaggagattgtgaattgtgatttgtgagaagagaagaagaaaccga----ttgtgagagtagagaagaggagaagaaac 16693112  T

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Target: scaffold0067 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 6879 - 6776
Alignment:
Q  172 taaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaa 271  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||| ||    
T  6879 taaattaattactctttattctaccaacttacttacttttaatattctttctcataataaataagcgcacaaatgaaatttagcttcaaacatacttgaa 6780  T
Q  272 actt 275  Q
    ||||    
T  6779 actt 6776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 197 - 336
Target Start/End: Original strand, 258358 - 258498
Alignment:
Q  197 aacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatacttaaaacttaatcgat-cttcttataaaga 295  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||  || ||  |||||||||| |    
T  258358 aacttacttaattttaatattctctctcataataaataaaggcacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaa 258457  T
Q  296 gaaccaaaaaatatttcacttttgtttttaataaaagggac 336  Q
    | ||| |||||  | |||||||||||| |||||||| ||||    
T  258458 ggacctaaaaaattctcacttttgtttctaataaaaaggac 258498  T

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Target: scaffold0057 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 169 - 268
Target Start/End: Complemental strand, 30589 - 30490
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaagacacaaatgaaatttagcttcaaacatactt 268  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||  |||||||| ||||    
T  30589 ccctaaattaattactcttgattccgccaacttacttacttttaatattgtctctcataataaataagggcacaaatgaaatttaatttcaaacaaactt 30490  T

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Target: scaffold0057; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 30844 - 30906
Alignment:
Q  169 ccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataa 235  Q
    ||||||||||||||||||| ||||||||||| ||||    |||||||||||||||||||||||||||    
T  30844 ccctaaattaattactcttgattccaccaacatact----tttaatattctctctcataataaataa 30906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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