View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15250_low_4 (Length: 250)
Name: NF15250_low_4
Description: NF15250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15250_low_4 |
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| [»] chr4 (11 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 2391069 - 2391303
Alignment:
| Q |
16 |
atcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctc |
115 |
Q |
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| T |
2391069 |
atcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctc |
2391168 |
T |
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| Q |
116 |
aacacaatcaccccaacacgcttcttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgg |
215 |
Q |
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| T |
2391169 |
aatgcaatcgccccaacacgcttcttacccaaatctccactttccctttagtcctcagatcgctcattctttccaacttctacaaaatccctaaagatgg |
2391268 |
T |
|
| Q |
216 |
gttccgagctttgtccaaaaagatgaaaaatttga |
250 |
Q |
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| T |
2391269 |
gttccgagctttgtccaaaaagatgaaaaatttga |
2391303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 2381441 - 2381675
Alignment:
| Q |
16 |
atcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctc |
115 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||| |||||| |||||||| |||||| |||| |
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| T |
2381441 |
atcaccctacaaaccatccctttcattcctcaactcttccaacgcttctctagtgtcacatccctcaatctcgcatccagcaacctcacttacttttctc |
2381540 |
T |
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| Q |
116 |
aacacaatcaccccaacacgcttcttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgg |
215 |
Q |
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| T |
2381541 |
tacacaatcaccccaacatgcttcttacccaaatctccgctttccctttagacctcaaatcgctcattttctccaagttttttaaaatccctaaagatgg |
2381640 |
T |
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| Q |
216 |
gttccgagctttgtccaaaaagatgaaaaatttga |
250 |
Q |
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| T |
2381641 |
gttccgagctttgtccaaaaagatgaaaaatttga |
2381675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 2380186 - 2380411
Alignment:
| Q |
16 |
atcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctc |
115 |
Q |
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||||||||||||||||||||||| ||||||| |||| ||| ||| ||| |||||||||||||||||||||||| ||||||| ||| |
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| T |
2380186 |
atcacccaacaaaccatcccttttattcctcgcctcttgcaaaggtgtcgtaacatcacatccctcaatctcacatccatcaacctcc---------ctc |
2380276 |
T |
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| Q |
116 |
aacacaatcaccccaacacgcttcttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgg |
215 |
Q |
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|| ||||||||| ||||||||||||||| ||||||||| |||| |||||||| |||| |||||||||||| |||||| ||| |||||| || ||| |||| |
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| T |
2380277 |
aatacaatcacctcaacacgcttcttacacaaatctccgctttacctttagatctcaaatcgctcattctctccaacctcttcaaaatcccgaaaaatgg |
2380376 |
T |
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| Q |
216 |
gttccgagctttgtccaaaaagatgaaaaatttga |
250 |
Q |
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| T |
2380377 |
attgcgacctttgtccaaaaagatgaaaaatttga |
2380411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 250
Target Start/End: Original strand, 2382562 - 2382785
Alignment:
| Q |
28 |
accatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcacc |
127 |
Q |
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||||||||||||||||||| |||||| | || || |||||||||||||||||||| |||||||| |||||||| | ||||||||||| ||||| ||| |
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| T |
2382562 |
accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcacatccctcaacctcactcacttctctcaatacaattacc |
2382661 |
T |
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| Q |
128 |
ccaacacgcttctta-cccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctt |
226 |
Q |
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|||||||||||||| | ||||||| || |||||||| |||| ||| |||||||| |||||| ||| |||||| | || | |||| || ||||||| |
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| T |
2382662 |
tcaacacgcttcttatgcaaaatctctgtttcacctttagatctcaaatcactcattctctccaacctcttcaaaatccatataaatggattgcgagctt |
2382761 |
T |
|
| Q |
227 |
tgtccaaaaagatgaaaaatttga |
250 |
Q |
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||||||||||||||||||| |||| |
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| T |
2382762 |
tgtccaaaaagatgaaaaaattga |
2382785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 2525625 - 2525588
Alignment:
| Q |
144 |
ccaaatctccactttccctttagacctcagatcgctca |
181 |
Q |
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| T |
2525625 |
ccaaatctccactttccctttagacctcaaatcgctca |
2525588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 2376407 - 2376439
Alignment:
| Q |
140 |
ttacccaaatctccactttccctttagacctca |
172 |
Q |
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| T |
2376407 |
ttacccaaatctccactttccctttagacctca |
2376439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 2621399 - 2621447
Alignment:
| Q |
202 |
attcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttga |
250 |
Q |
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| T |
2621399 |
attcctacagatgggttgcgagctttctccaaaaatatgaaaaatttga |
2621447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 2467423 - 2467309
Alignment:
| Q |
136 |
cttcttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaa |
235 |
Q |
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| T |
2467423 |
cttcttaccaaaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaag |
2467324 |
T |
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| Q |
236 |
agatgaaaaatttga |
250 |
Q |
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| T |
2467323 |
agatgaaaaatttga |
2467309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 250
Target Start/End: Complemental strand, 2486101 - 2486071
Alignment:
| Q |
220 |
cgagctttgtccaaaaagatgaaaaatttga |
250 |
Q |
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| T |
2486101 |
cgagctttgtccaaaaagatgaaaaatttga |
2486071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 2534124 - 2534079
Alignment:
| Q |
203 |
ttcctaaagatgggttccgagctttgtccaaaaagatgaaaaattt |
248 |
Q |
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| T |
2534124 |
ttcctgaaaatgagttccgagctttgtccaagaagatgaaaaattt |
2534079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 2477465 - 2477421
Alignment:
| Q |
135 |
gcttcttacccaaatctccactttccctttagacctcagatcgct |
179 |
Q |
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| T |
2477465 |
gcttcttacccaaatatccactttagctatagacctcagatcgct |
2477421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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