View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15250_low_5 (Length: 204)
Name: NF15250_low_5
Description: NF15250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15250_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 34387491 - 34387655
Alignment:
| Q |
24 |
gaaaatcttccaacggcaaaccctccacccggtaacctccaaattgtcaacccaacattctcgtcttcattcgaattggaaatttcattgttaatttgtg |
123 |
Q |
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| T |
34387491 |
gaaaatcttccaacggcaaaccctccacccggtaacctccaaattgtcaacccaacattctcgtcttcattcgaattggaaatttcattgttaatttgtg |
34387590 |
T |
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| Q |
124 |
gtgattcacaaggcaattcatgtcgacaaacgggacaagaattttgaattgcaagccatggaagt |
188 |
Q |
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| T |
34387591 |
gtgattcacaaggcaattcatgtcgacaaacgggacaagaattttgaattgcaagccatggaagt |
34387655 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 41697403 - 41697456
Alignment:
| Q |
26 |
aaatcttccaacggcaaaccctccacccggtaacctccaaattgtcaacccaac |
79 |
Q |
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| T |
41697403 |
aaatcttccaacagcaaatccacctcccggtaacctccatattgtcaatccaac |
41697456 |
T |
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