View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15251_high_10 (Length: 260)
Name: NF15251_high_10
Description: NF15251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15251_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 245
Target Start/End: Original strand, 5476170 - 5476391
Alignment:
| Q |
24 |
tcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5476170 |
tcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaa |
5476269 |
T |
|
| Q |
124 |
agatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttcta |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5476270 |
agatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatattcta |
5476369 |
T |
|
| Q |
224 |
aagtttgagctcaatacctatg |
245 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5476370 |
aagtttgagctcaatacctatg |
5476391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 5484144 - 5484319
Alignment:
| Q |
62 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatggg |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||| | |
|
|
| T |
5484144 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaatagatctcaaagatccatccaattgcctttcttcatgag |
5484243 |
T |
|
| Q |
162 |
tcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctcaa |
237 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5484244 |
ttggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctcaa |
5484319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 62 - 235
Target Start/End: Original strand, 5489329 - 5489502
Alignment:
| Q |
62 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatggg |
161 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
5489329 |
agccttaatgttagtactctttgcattaaggaagagagagtggcactccttaaaatcaaaaaagatctcaaggatccttcaaattgcctttcttcatggg |
5489428 |
T |
|
| Q |
162 |
tcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctc |
235 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5489429 |
ttggggaagattgttgtaattggaagggtatagaatgtgacaaccaaactggtcatgttcaaaagtttgagctc |
5489502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 5495073 - 5495285
Alignment:
| Q |
24 |
tcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaa |
123 |
Q |
| |
|
||||||| |||||||||||||| |||| || ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5495073 |
tcttctttctttttgcatcaacccaatatgtagtgagtagcaataatgttagcactctttgcattaaggaagagagagtggcactccttaaaatcaaaaa |
5495172 |
T |
|
| Q |
124 |
agatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttcta |
223 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |
|
|
| T |
5495173 |
agatctcaaagatccatccaattgtctttcttcatgggtcggggaagattgctgtaattggaagggtatacaatgtaacaaccaaactggtcatgtttta |
5495272 |
T |
|
| Q |
224 |
aagtttgagctca |
236 |
Q |
| |
|
||| || |||||| |
|
|
| T |
5495273 |
aagcttaagctca |
5495285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 5481257 - 5481447
Alignment:
| Q |
24 |
tcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
5481257 |
tcttcttcctttttgcatcaactcaatgtgaagttaaaagccttaatgttagcactctttgcattaaggaagagagaatggcactccttaacgtcaaaaa |
5481356 |
T |
|
| Q |
124 |
agatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggt |
214 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| ||| ||||||| ||| |||| ||||| ||||||||| | ||||||||| |
|
|
| T |
5481357 |
agatctcaatgatccttacaattgcctttcttcatgggttgggaaagattgttgtcgctggattggtatagaatgtgactatcaaactggt |
5481447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 5466507 - 5466684
Alignment:
| Q |
27 |
tcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaaga |
126 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5466507 |
tctttctttttgcatcaactcagtgtgtagttatgagccttgatgttagcactctttgcattaaagaagagagggtggcactccttaacataaaaaaaga |
5466606 |
T |
|
| Q |
127 |
tctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattggaagggtattgaatgtgacaa |
204 |
Q |
| |
|
||| || |||||||||||||||||||| || ||||| ||| | ||||||||| | |||| ||||| |||||||||| |
|
|
| T |
5466607 |
tctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtgactggattggtatacaatgtgacaa |
5466684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University