View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15251_high_3 (Length: 428)
Name: NF15251_high_3
Description: NF15251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15251_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 15 - 421
Target Start/End: Original strand, 28930449 - 28930855
Alignment:
| Q |
15 |
tttttggtgtagttactagcttggctttagtatctagggtgtttgtctgctatttctcttttaacctgctgtgccgagtttctaatgtatcttttagcct |
114 |
Q |
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| T |
28930449 |
tttttggtgtagttactagcttggctttagtatctagggtgtttgtctgctatttctcttttaacctgctgtgccgagtttctaatgtagcttttagcct |
28930548 |
T |
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| Q |
115 |
acctccggttacttcttgtgatcggagcggggtttattcaataaaactttagccgattagaaaaaatgacaactcttggttcattctagacaatttgcta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28930549 |
acctccggttacttcttgtgatcggagcggggtttattcaataaaactttagccgattagaaaaaaggacaactcttggttcattctagacaatttgcta |
28930648 |
T |
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| Q |
215 |
agcagcaattcagcaaattgctctgtaaaacatcaactatattttactagttagcagttattctagacaatttggtaatactaaatagatagaaccaaaa |
314 |
Q |
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| T |
28930649 |
agcagcaattcagcaaattgctctgtaaaacatcaactatattttactagttagcagttattctagacaatttggtaatactaaatagatagaaccaaaa |
28930748 |
T |
|
| Q |
315 |
tatctaacttaaaactgaacaagtaaaattctcaagttttagtgtagaaattcttttatgatctcagcttattctcacactagttatgttctcgtggtac |
414 |
Q |
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| T |
28930749 |
tatctaacttaaaactgaaccagtaaaattctcaagttttagtgtagaaattcttttatgatctcagcttattctcacactagttatgttctcgtggtac |
28930848 |
T |
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| Q |
415 |
atctgtg |
421 |
Q |
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| T |
28930849 |
atttgtg |
28930855 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 35123469 - 35123424
Alignment:
| Q |
247 |
tcaactatattttactagttagcagttattctagacaatttggtaa |
292 |
Q |
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|||||||||||| |||||| ||| |||||||||||||||||||||| |
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| T |
35123469 |
tcaactatatttaactagtaagcggttattctagacaatttggtaa |
35123424 |
T |
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