View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15251_high_8 (Length: 280)
Name: NF15251_high_8
Description: NF15251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15251_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 37793336 - 37793605
Alignment:
| Q |
1 |
ctggtcagagccatatatgattgacagttcacatgtccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacatt |
100 |
Q |
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| T |
37793336 |
ctggtcagagccatatatgattgacagttcacatttccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacatt |
37793435 |
T |
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| Q |
101 |
gatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaatc |
200 |
Q |
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| T |
37793436 |
gatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaatc |
37793535 |
T |
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| Q |
201 |
ctttaatggatgcattatttcctgcagagtgtgaacatgaatactttagttctgtgtacgatgtagaatt |
270 |
Q |
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| T |
37793536 |
ctttaatggatgcattatttcctgcagagtgtgaacatgaatactttagttctgtgtacgatgtagaatt |
37793605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 37792868 - 37793066
Alignment:
| Q |
1 |
ctggtcagagccatatatgattgacagttcacatgtccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacatt |
100 |
Q |
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|||| |||||||||||||||| |||| |||| |||||| | |||||||| ||||||||||||| |||||||| ||||||||||||||||| |||| || |
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| T |
37792868 |
ctggacagagccatatatgatagacaattcatatgtcccccataatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgagaacaatatc |
37792967 |
T |
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| Q |
101 |
gatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaat |
199 |
Q |
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| T |
37792968 |
gatcccaatattacgagtccactatcttcacaaccattttcaagtggattctcttgcataacaacagaaaatttcgcttccactatatcacatgaaaat |
37793066 |
T |
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