View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15251_low_10 (Length: 276)
Name: NF15251_low_10
Description: NF15251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15251_low_10 |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: scaffold0115 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 45846 - 45579
Alignment:
| Q |
1 |
tcatcaaagagtttcatgacacacctctttcaggacactccagtctccagccaactctatccagaatggccgcatcgtttctttaaccatatgcctataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
45846 |
tcatcaaagagtttcatgacacacctctttcaggacactccagtctccagccaactctagccagaatggccgcatcgtttctttgaccagatgcctataa |
45747 |
T |
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| Q |
101 |
agatatcaaacactgggtccttaggtgcgaaattttccataagagtaagtacatgccaaccaaaaaacaggggttactcaaaccattaccaatccctcaa |
200 |
Q |
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|||| | ||||| |||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45746 |
agatgtgaaacattgggtcctcaggtgcgaaatttttcagaagagtaagtaaatgccaaccaagaaacaggggttactcaaaccattaccaatccctcaa |
45647 |
T |
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| Q |
201 |
caagtgtggatagatctatctatggattttataacgcacttaccaagttcctttgggtcatctgtgat |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45646 |
caagtgtggatagatctatctatggattttataacgcacttaccaagttcctttgggtcatctgtgat |
45579 |
T |
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