View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15251_low_15 (Length: 245)
Name: NF15251_low_15
Description: NF15251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15251_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 9825068 - 9825298
Alignment:
| Q |
1 |
aaagacacaaaataatttaagaaaataacatacttaatgtaatcataggtgtcggtctaggacaccgacacatgtccgacatcgagacacacctagttga |
100 |
Q |
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| T |
9825068 |
aaagacacaaaataatttaagaaaataacatacttaatgtaatcataggtgtcggtctaggacaccgacacatgtccgacatcgcgacacacctagttga |
9825167 |
T |
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| Q |
101 |
ccgagtgtccttgcttcacaggttaccattgattagaaaaaatacataacatacacagcatgaactgcagtttgacattaagttgcagttgaatataatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9825168 |
ccgagtgtccttgcttcacaggttaccattgattagaaaaaatacataacacacacagcatgaactgcagtttgacattaagttgcagttgaatataatg |
9825267 |
T |
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| Q |
201 |
cacagatggtataacaaaacatgtacatact |
231 |
Q |
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| T |
9825268 |
cacagatggtataacaaaatatgtacatact |
9825298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 9819505 - 9819612
Alignment:
| Q |
122 |
gttaccattgattagaaaaaatacataacatacacagcatgaactgcagtttgacattaagttgcagttgaatataatgcacagatggtataacaaaaca |
221 |
Q |
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| T |
9819505 |
gttaccattgatcaggaaaaa--cataatatacacagcatgaaccgaagtttgacatgatgttgcagttgaatataaagcacaaatggtatagcaaaaca |
9819602 |
T |
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| Q |
222 |
tgtacatact |
231 |
Q |
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| T |
9819603 |
agtacatact |
9819612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 45451562 - 45451642
Alignment:
| Q |
11 |
aataatttaagaaaataacatacttaa-tgtaatcataggtgtcggtctaggacaccgacacatgtccgacatcgagacaca |
91 |
Q |
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| T |
45451562 |
aataatttgagaaaatcacatacttcagtataataatatgtgtcggtgtcggacac-gacacatgtccgacaccgagacaca |
45451642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 18607147 - 18607103
Alignment:
| Q |
11 |
aataatttaagaaaataacatactt-aatgtaatcataggtgtcg |
54 |
Q |
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| T |
18607147 |
aataatttgagaaaataacataattcaatgtaatcataggtgtcg |
18607103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 19980740 - 19980768
Alignment:
| Q |
67 |
gacacatgtccgacatcgagacacaccta |
95 |
Q |
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| T |
19980740 |
gacacatgtccgacatcgagacacaccta |
19980768 |
T |
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