View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15251_low_2 (Length: 480)

Name: NF15251_low_2
Description: NF15251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15251_low_2
NF15251_low_2
[»] chr1 (3 HSPs)
chr1 (11-377)||(10187153-10187524)
chr1 (11-377)||(10190104-10190480)
chr1 (385-457)||(33305897-33305969)
[»] chr4 (1 HSPs)
chr4 (382-462)||(43577750-43577830)
[»] chr7 (1 HSPs)
chr7 (382-464)||(42127232-42127314)
[»] chr8 (2 HSPs)
chr8 (385-457)||(15297086-15297158)
chr8 (385-457)||(15477455-15477527)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 10187524 - 10187153
Alignment:
Q  11 cataggacatgatgttgaagaagcagaaggagtagctatgaaaagggtgaagaggagaagaaggaacattggtttgttatccattttttggatttgtgtt 110  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10187524 cataggacatgatattgaagaagcagaaggagtagctatggaaagggtgaagaggagaagaaggaacattggtttgttatccattttttggatttgtgtt 10187425  T
Q  111 gaagacacaaacacagtggattgatgnnnnnnngaaagcattagaagcttattatagacatttttcagagatgagtttgttttactagtaaacctcagcg 210  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  10187424 gaagacacaaacacagtggattgatgtttttttgaaagcattagaagcttattatagacatttttcagagatgagtttgttttactagtcaccctcagcg 10187325  T
Q  211 tactatagtcaaaagacatgcattatatattattaata-ctacattataataagttaatcaaatgaacatgt----gggcataatgatgtggtttcattt 305  Q
    |||||| ||||||||||||  ||||||||||| || || ||||||||||||||||||||||||||||||||     |||||||||||||||||||| |||    
T  10187324 tactatggtcaaaagacatttattatatattaatactaactacattataataagttaatcaaatgaacatgcatgcgggcataatgatgtggtttctttt 10187225  T
Q  306 gttggtcttagtcaaaatgttactatgaattttggttaacaaataatataggtagataagggaaccttccta 377  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10187224 gttggtcttagtcaaaatgttactatgaattttggtttacaaataatataggtagataagggaaccttccta 10187153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 10190480 - 10190104
Alignment:
Q  11 cataggacatgatgttgaagaagcagaaggagtagctatgaaaagggtgaagaggagaagaaggaacattggtttgttatccattttttggatttgtgtt 110  Q
    |||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||    
T  10190480 catagggcatgatgctgcagaagcagaaggagtagctatgaaaatggtgaagaggagaagaagaaacattggtttgttattcatcttttggatttgtgtt 10190381  T
Q  111 gaagacacaaacacagtggattgatgnnnnnnngaaagcattagaagcttattatagaca--tttttcagagatgagtttgttttactagtaaacctcag 208  Q
    ||||||||||||| |||||||||||        ||||||||| || |||||| |||||||  ||||| ||||||||||||||||||||||| |||||| |    
T  10190380 gaagacacaaacatagtggattgat--ttttttgaaagcatttgaggcttataatagacatgtttttgagagatgagtttgttttactagtcaacctcgg 10190283  T
Q  209 cgtactatagtcaaaagacatgcattatatattattaatactacattataataagttaatcaaatgaacatgtgggcat----------aatgatgtggt 298  Q
    | |||||| |||||||||||||  |||||   |||||||| | |||||||||||| |||| |||||| |||||||||||          | |||||||||    
T  10190282 catactatggtcaaaagacatgttttatagtatattaatatttcattataataagataatgaaatgagcatgtgggcattcacggacaaagtgatgtggt 10190183  T
Q  299 ttcatttgttggtcttagtcaaaatgttactatgaattttggttaacaaataatataggtagataagggaaccttccta 377  Q
    ||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  10190182 ttcttttgttggtcttagtcaaaatgtttgtatgaattttggttaacaaataatataggttgttaagggaaccttccta 10190104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 457
Target Start/End: Original strand, 33305897 - 33305969
Alignment:
Q  385 aggattttcacatatctcatccatcacccatcattctctattgtgataacaaatcagctttacacatagcagc 457  Q
    |||||||||| ||||||||| | ||||| |||||  |||| ||||| || ||||||||| | |||||||||||    
T  33305897 aggattttcaaatatctcattcttcaccaatcatcatctactgtgacaataaatcagctatgcacatagcagc 33305969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 382 - 462
Target Start/End: Original strand, 43577750 - 43577830
Alignment:
Q  382 tgaaggattttcacatatctcatccatcacccatcattctctattgtgataacaaatcagctttacacatagcagcaaacc 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43577750 tgaaggattttcacatatctcatccatcacccatcattctctattgtgataacaaatcagctttacacatagcagcaaacc 43577830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 382 - 464
Target Start/End: Original strand, 42127232 - 42127314
Alignment:
Q  382 tgaaggattttcacatatctcatccatcacccatcattctctattgtgataacaaatcagctttacacatagcagcaaaccct 464  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42127232 tgaaggattttcacatatctcatccatcacccataattctctattgtgataacaaatcagctttacacatagcagcaaaccct 42127314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 457
Target Start/End: Original strand, 15297086 - 15297158
Alignment:
Q  385 aggattttcacatatctcatccatcacccatcattctctattgtgataacaaatcagctttacacatagcagc 457  Q
    |||| |||| |||| ||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||    
T  15297086 aggactttctcatacctcatccatcacctatcattctctattgtgacaaaaaatcagctttacatatagcagc 15297158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 457
Target Start/End: Original strand, 15477455 - 15477527
Alignment:
Q  385 aggattttcacatatctcatccatcacccatcattctctattgtgataacaaatcagctttacacatagcagc 457  Q
    |||| |||| |||| ||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||    
T  15477455 aggactttctcatacctcatccatcacctatcattctctattgtgacaaaaaatcagctttacatatagcagc 15477527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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