View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15251_low_3 (Length: 449)
Name: NF15251_low_3
Description: NF15251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15251_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 175; Significance: 5e-94; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 23653 - 23903
Alignment:
| Q |
17 |
cagatggtagggacagtgcacttgaatatgtagaggtcgaggtttgaatcctgaatttcctgtttattcacctttataatgaaattctagctattagatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23653 |
cagatggtagggacagtgcacttgaatatgtagaggtcgatgtttgaatcctagattttttgtttattcacctttataataaaattctagctattagatt |
23752 |
T |
|
| Q |
117 |
actagaaagnnnnnnn--tact-agaaataattaattgcttggtcatcataaaacattctggtaaccccaaacatgaaacaatactatcacccttttgta |
213 |
Q |
| |
|
|||| |||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23753 |
actaaaaagaaaaaaaaatactgagaaataattaattgcttggtcaacataaaacattctggtaaccccaaacattaaacaatactatcacccttttgta |
23852 |
T |
|
| Q |
214 |
gagtgtcttgagagttgaaactttgtaaatcttatttcaagctaataaaaa |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23853 |
gagtgtcttgagagttgaaactttgtaaatcttatttcaagctaataaaaa |
23903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 190 - 324
Target Start/End: Original strand, 13994 - 14128
Alignment:
| Q |
190 |
aaacaatactatcacccttttgtagagtgtcttgagagttgaaactttgtaaatcttatttcaagctaataaaaagggattgaaatgataaaacatgcaa |
289 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||| |
|
|
| T |
13994 |
aaacaataccttcatccttttgtagagtgtcttaagagttgaaactttgtaaatcttatttcaagctaacaataagggcttgaaatgataaaagatgcaa |
14093 |
T |
|
| Q |
290 |
cactctaaagtttatatggtaagtctttgtatgtc |
324 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||| |
|
|
| T |
14094 |
cactctaaattttatacggtaagtctttgtatgtc |
14128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 3068 - 3158
Alignment:
| Q |
234 |
ctttgtaaatcttatttcaagctaataaaaagggattgaaatgataaaacatgcaacactctaaagtttatatggtaagtctttgtatgtc |
324 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |||||||||| ||| ||| ||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
3068 |
ctttgtaaatcttatttcaagctaacaataagggcttgaaatgatgaaagatggaacactctaaattttatacggtaagtctttgtatgtc |
3158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 2857 - 2960
Alignment:
| Q |
21 |
tggtagggacagtgcacttgaatatgtagaggtcgaggtttgaatcctgaatttcctgtttattcacctttataa--tgaaattctagctattagattac |
118 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||| |||| ||| |||||| |||||||||||| |||||||||| |
|
|
| T |
2857 |
tggtagggacagtgcactggaatatgttgaggtcgaggtttgaatcctaaattctctgtctatttaccgttataaggtgaaattctagccattagattac |
2956 |
T |
|
| Q |
119 |
taga |
122 |
Q |
| |
|
|||| |
|
|
| T |
2957 |
taga |
2960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 13815 - 13916
Alignment:
| Q |
21 |
tggtagggacagtgcacttgaatatgtagaggtcgaggtttgaatcctgaatttcctgtttattcacctttataatgaaattctagctattagattacta |
120 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||||||||||||| | |||| |||||||||||||| ||| |||||||||||| |||||||||| |
|
|
| T |
13815 |
tggtagcgacagtgcactggaatatgttgaggtcgaggtttgaatcttaaattccctgtttattcaccgttaaggtgaaattctagcctctagattacta |
13914 |
T |
|
| Q |
121 |
ga |
122 |
Q |
| |
|
|| |
|
|
| T |
13915 |
ga |
13916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 446
Target Start/End: Original strand, 14218 - 14249
Alignment:
| Q |
415 |
gtgtgtagtaaccaaaggattaattgtaagaa |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
14218 |
gtgtgtagtaaccaaaggattaattgtaagaa |
14249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University