View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15251_low_5 (Length: 376)
Name: NF15251_low_5
Description: NF15251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15251_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 48182503 - 48182151
Alignment:
| Q |
8 |
ataatactgctttccaatttgagtaccggctgaagaagagacccttttggtgaagtggagaagctttaataggagagggagtgcttctgtttggaatgtc |
107 |
Q |
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| T |
48182503 |
ataatactgctttccaatttgagtaccggctgaagaagagacccttttggtgaagtggagaagctttaataggagagggagtgcttctgtttggaatgtc |
48182404 |
T |
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| Q |
108 |
tttaaattttttgattccaacctctttacacagttctgcatctgctactattattagtggctgtcttcccatatgaaatctgcactaataaatattagga |
207 |
Q |
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| T |
48182403 |
tttaaattttttgattccaacctctttacacagttctgcatctgctactattattagtggctgtcttcccatatgaaatctgcactaataaatattagga |
48182304 |
T |
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| Q |
208 |
acatattaataacaataaacagtttttgcagtagacaaagaaagaatgtggattctctagctgtagaaaccgttggatttagagagaaaaattaaagatt |
307 |
Q |
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| T |
48182303 |
acatattaataacaataaacagtttttgcagtagacaaagaaagaatgtgtattctatagctgtagaaaccgttggatttagagagaaaaattaaagatt |
48182204 |
T |
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| Q |
308 |
atacattctctgactaaatccaaccggatccaaacaccccaaaagatacaatc |
360 |
Q |
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| T |
48182203 |
atacattctctgactaaatccaaccggatccaaacaccccaaaagatacaatc |
48182151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 38 - 190
Target Start/End: Original strand, 4091563 - 4091715
Alignment:
| Q |
38 |
tgaagaagagacccttttggtgaagtggagaagctttaataggagagggagtgcttctgtttggaatgtctttaaattttttgattccaacctctttaca |
137 |
Q |
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| T |
4091563 |
tgaagaatagacctttttggtgaagaggagaagcagagataggagaaggaatgcttctgtttggaatttctttgaattttttaattcccacttctttaca |
4091662 |
T |
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| Q |
138 |
cagttctgcatctgctactattattagtggctgtcttcccatatgaaatctgc |
190 |
Q |
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| T |
4091663 |
aagctctgcatctgctatgattataagaggttgtcttcccatatgaaatctgc |
4091715 |
T |
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