View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15251_low_6 (Length: 333)
Name: NF15251_low_6
Description: NF15251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15251_low_6 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 36037219 - 36037551
Alignment:
| Q |
1 |
atttgtctattaaatgtgtttataagtaggtagattatataaaacaaaacagaaaaataagttaattctctagttttattgtaatggtagaacgttcnnn |
100 |
Q |
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| T |
36037219 |
atttgtctattaaatgtgtttataagtatgtagattatataaaacaaaacagaaaaataagtcacttctctcagtttattgtaatggtagaacgttcaaa |
36037318 |
T |
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| Q |
101 |
nnnngaagacgtgcaaatatctttaaggaaatgataagtggtcatcaaacacaagacaaattgatcaagctcgttgcaagcaagcaaagctttcgattta |
200 |
Q |
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| T |
36037319 |
taaagaagacgtgcaaatatctttaaggaaatgacaagtggtcatcaaacacaagataaattgatcaagctcgttgcaagcaagctaatatttcgattta |
36037418 |
T |
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| Q |
201 |
cacattgttaacaaatgcatcatctttgacaagtagtacaagtcaatgtctggacgtgattatcatctgtgtggtcggttgcattcgcgacaattataaa |
300 |
Q |
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| T |
36037419 |
cacattgttaacaaatgcatcatctttgacaagaagtgcaagtcaatgtatggacatgatgatcatatgtgtggtcggttgcattcgcggcaagtttaaa |
36037518 |
T |
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| Q |
301 |
tatctgaccaattaagcaatcatttaggtgatt |
333 |
Q |
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| T |
36037519 |
tatttgaccaattaagcaatcatttaggtgatt |
36037551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 25888969 - 25888926
Alignment:
| Q |
126 |
aggaaatgataagtggtcatcaaacacaagacaaattgatcaag |
169 |
Q |
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| T |
25888969 |
aggaaatgacaagtggtcatcaaacacatgacaaattgatcaag |
25888926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 18055 - 18114
Alignment:
| Q |
106 |
aagacgtgcaaatatctttaaggaaatgataagtggtcatcaaacacaagacaaattgat |
165 |
Q |
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| T |
18055 |
aagacgtgcaactatctttaaggtaatgacaaatggtcatcaagcacaagacaagttgat |
18114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 16891996 - 16892066
Alignment:
| Q |
118 |
tatctttaaggaaatgataagtggtcatcaaacacaagacaaattgatcaagctcgttgcaagcaagcaaa |
188 |
Q |
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| T |
16891996 |
tatctttgaggtaatgacaagtggtcatcaatcacaagataagttgatcaagatattagcaagcaagcaaa |
16892066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 30900621 - 30900654
Alignment:
| Q |
135 |
taagtggtcatcaaacacaagacaaattgatcaa |
168 |
Q |
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| T |
30900621 |
taagtggtcatcaaacacaagataaattgatcaa |
30900654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 15647810 - 15647854
Alignment:
| Q |
125 |
aaggaaatgataagtggtcatcaaacacaagacaaattgatcaag |
169 |
Q |
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| T |
15647810 |
aaggaaataacaagtggtcatcaaacataagacaagttgatcaag |
15647854 |
T |
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