View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15251_low_7 (Length: 285)

Name: NF15251_low_7
Description: NF15251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15251_low_7
NF15251_low_7
[»] chr3 (3 HSPs)
chr3 (1-282)||(49161899-49162183)
chr3 (1-282)||(53268552-53268836)
chr3 (16-282)||(31167749-31168015)
[»] chr7 (3 HSPs)
chr7 (180-282)||(23633726-23633828)
chr7 (180-269)||(39147613-39147702)
chr7 (5-57)||(23633971-23634023)
[»] chr5 (1 HSPs)
chr5 (180-269)||(6901016-6901105)
[»] chr2 (1 HSPs)
chr2 (5-78)||(6609419-6609492)
[»] chr1 (3 HSPs)
chr1 (5-78)||(1618981-1619054)
chr1 (5-78)||(48582351-48582424)
chr1 (222-266)||(1619595-1619639)
[»] chr4 (1 HSPs)
chr4 (27-65)||(36571802-36571840)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 49161899 - 49162183
Alignment:
Q  1 tcctaccatgggtcacttagatgttcaccatttgatcaaaagaagaccacaatattaacacgttccctcaacactatannnnnnncacaatatcttctcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||    
T  49161899 tcctaccatgggtcacttagatgttcaccatttgatcaaaagaagaccacaatattaacatgttccctcaacactatatttttt-cacaatatcttctcc 49161997  T
Q  101 aaccattctccctcctctgtctcacccaacacttggagcaactcac---ccaccaccaccaacctcattatcaccataacatttaccaatggcttctaat 197  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49161998 aaccattctccctccactctctcacccaacacttgcagcaactcacgcaccaccaccaccaacctcactatcaccataacatttaccaatggcttctaat 49162097  T
Q  198 ttaaacccaaaa-ataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacttataacaatttcatctcactc 282  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  49162098 ttaaactcaaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacctataacaatttcatttcactc 49162183  T

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Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 53268552 - 53268836
Alignment:
Q  1 tcctaccatgggtcacttagatgttcaccatttgatcaaaagaagaccacaatattaacacgttccctcaacactatannnnnnncacaatatcttctcc 100  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| | |||||||||||||||||       ||||||||||||| |    
T  53268552 tcctaccatggatcacttagatgttcatcatttgatcaaaagaagaccacgatattaatatgttccctcaacactatatttttt-cacaatatcttcttc 53268650  T
Q  101 aaccattctccctcctctgtctcacccaacacttggagcaactcacccaccaccacca---acctcattatcaccataacatttaccaatggcttctaat 197  Q
    ||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||    
T  53268651 aaccattctacctcctctctctcacccaacacttgcagcaactcacccaccaccaccaccaacctcactatcaccataacatttaccaatggcttctaat 53268750  T
Q  198 ttaaacccaaaa-ataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacttataacaatttcatctcactc 282  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  53268751 ttaaacccaaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacctataacaatttcatttcactc 53268836  T

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Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 31167749 - 31168015
Alignment:
Q  16 cttagatgttcaccatttgatcaaaagaagaccacaatattaacacgttccctcaacactatannnnnnncacaatatcttctccaaccattctccctcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||| |||||    
T  31167749 cttagatgttcaccatttgatcaaaagaagaccacaatattaacatgttccctcaacactatatttttt-cacaatatcttctccaaccattctacctcc 31167847  T
Q  116 tctgtctcacccaacacttggagcaactcacccaccaccacca---acctcattatcaccataacatttaccaatggcttctaatttaaacccaaaa-at 211  Q
    ||| ||||||||||||||||   ||||||||||||||||||||   |||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  31167848 tctctctcacccaacacttg---caactcacccaccaccaccaccaacctcactatcaccataacatttaccaatggcttctaatttaaacccaaaaaat 31167944  T
Q  212 aaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacttataacaatttcatctcactc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  31167945 aaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacctataacaatttcatttcactc 31168015  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 282
Target Start/End: Complemental strand, 23633828 - 23633726
Alignment:
Q  180 ttaccaatggcttctaatttaaacccaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacttataacaatttcatctca 279  Q
    |||||||||||||||| |  ||| | |||||||||| |||||||||||||||||||| ||||||||| ||| ||| |||||||||||||| | ||| |||    
T  23633828 ttaccaatggcttctattgaaaatcaaaaaataaatgtaaacattaatcatcatcaaactcaaatattcaagtcataaaacttataacaactacatttca 23633729  T
Q  280 ctc 282  Q
    |||    
T  23633728 ctc 23633726  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 39147702 - 39147613
Alignment:
Q  180 ttaccaatggcttctaatttaaacccaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacttataacaa 269  Q
    |||||||||||||||| |  ||| | |||||||||| |||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||    
T  39147702 ttaccaatggcttctattgaaaatcaaaaaataaatgtaaacattaatcatcatcaaactcaaatattcaagtcataaaacttataacaa 39147613  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 23634023 - 23633971
Alignment:
Q  5 accatgggtcacttagatgttcaccatttgatcaaaagaagaccacaatatta 57  Q
    ||||||||||| || ||| || ||||||||||||| ||||||||| |||||||    
T  23634023 accatgggtcaattggatttttaccatttgatcaatagaagaccataatatta 23633971  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 6901016 - 6901105
Alignment:
Q  180 ttaccaatggcttctaatttaaacccaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacttataacaa 269  Q
    |||||||||||||||| |  ||| | |||||||||| |||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||    
T  6901016 ttaccaatggcttctattgaaaatcaaaaaataaatgtaaacattaatcatcatcaaactcaaatattcaagtcataaaacttataacaa 6901105  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 6609492 - 6609419
Alignment:
Q  5 accatgggtcacttagatgttcaccatttgatcaaaagaagaccacaatattaacacgttccctcaacactata 78  Q
    ||||||||||| || | | || |||||||||||||||||||||||  |||||| || |||||||||||||||||    
T  6609492 accatgggtcaattggctttttaccatttgatcaaaagaagaccatgatattatcatgttccctcaacactata 6609419  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 1618981 - 1619054
Alignment:
Q  5 accatgggtcacttagatgttcaccatttgatcaaaagaagaccacaatattaacacgttccctcaacactata 78  Q
    ||||||||||| || | | || |||||||||||||||||||||||  |||||| || |||||||||||||||||    
T  1618981 accatgggtcaattggctttttaccatttgatcaaaagaagaccatgatattatcatgttccctcaacactata 1619054  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 48582351 - 48582424
Alignment:
Q  5 accatgggtcacttagatgttcaccatttgatcaaaagaagaccacaatattaacacgttccctcaacactata 78  Q
    ||||||||||| || | | || |||||||||||||||||||||||  |||||| || |||||||||||||||||    
T  48582351 accatgggtcaattggctttttaccatttgatcaaaagaagaccatgatattatcatgttccctcaacactata 48582424  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 1619639 - 1619595
Alignment:
Q  222 attaatcatcatcaagctcaaatatccaaatcagaaaacttataa 266  Q
    |||||||||||| || ||||||||||||| ||| |||||||||||    
T  1619639 attaatcatcattaaactcaaatatccaagtcataaaacttataa 1619595  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 36571802 - 36571840
Alignment:
Q  27 accatttgatcaaaagaagaccacaatattaacacgttc 65  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  36571802 accatttgatcaaaagaagaccacaatattaacatgttc 36571840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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