View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15252_low_1 (Length: 579)
Name: NF15252_low_1
Description: NF15252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15252_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 222 - 512
Target Start/End: Complemental strand, 35272733 - 35272444
Alignment:
| Q |
222 |
atcagtgtgtgcgtgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagc |
321 |
Q |
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| T |
35272733 |
atcagtgtgtgtgtgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagc |
35272634 |
T |
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| Q |
322 |
tcaagttaataatggacaaactcttgctggtatgtatatatgtctgattttgctctttctttacccattaatcagttcttgatgtgcaatttcggtagta |
421 |
Q |
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| T |
35272633 |
tcaagttaataatggacaaactcttgctggtatgtatatatgtctgattttgctctttctttacccattaatcagttcttgatgtgcaatttcggtagta |
35272534 |
T |
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| Q |
422 |
atgtcagttctaaaattattcatgtctgnnnnnnnnnnnnnnnnctttaatcatgtttcccaagaatggtttcttcattgatgccccttgc |
512 |
Q |
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| T |
35272533 |
atgtcagttctaaaatcattcatgtctg-tttttttagttttttctttaatcatgtttcccaagaatggtttcttcattgatgccccttgc |
35272444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 35272953 - 35272777
Alignment:
| Q |
1 |
aaaatgaaaagattttcttattttgtttgactctgcatactcacactattaactcgaccttagttcaacattttcatcatccattaatcttcttcttcat |
100 |
Q |
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| T |
35272953 |
aaaatgaaaagattttcttattttgtttgactctgcatactcacactattaactccaccttagttcaacattttcatcatccattaatcttcttcttcat |
35272854 |
T |
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| Q |
101 |
ctaagtgcaatttccttcaacatgaaccagaaaaatcccaaagaagaactgtgagaaaaatcgctgcatgcatgcatg |
178 |
Q |
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| T |
35272853 |
ctaagtgcaatttccttcaacatgaaccagaaaaatcccaaagaagaactgtgagaaaaa-cgctgcatgcatgcatg |
35272777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 234 - 329
Target Start/End: Complemental strand, 35254658 - 35254563
Alignment:
| Q |
234 |
gtgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagctcaagtta |
329 |
Q |
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| T |
35254658 |
gtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttcaaaaatgaagctcatgtta |
35254563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 328
Target Start/End: Complemental strand, 35248160 - 35248066
Alignment:
| Q |
234 |
gtgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagctcaagtt |
328 |
Q |
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| T |
35248160 |
gtgttctttgtagttttcaaaactttctgtgtgattacttcaagaagaagggattgtcaaacactgctaagattttcaaaaatgaagctcgagtt |
35248066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 35279498 - 35279462
Alignment:
| Q |
88 |
tcttcttcttcatctaagtgcaatttccttcaacatg |
124 |
Q |
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| T |
35279498 |
tcttcttcttcatctaagtgcaatttccttcatcatg |
35279462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 35279324 - 35279272
Alignment:
| Q |
236 |
gttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggatt |
288 |
Q |
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| T |
35279324 |
gttctgtgtagttttgatatctttattcatgattacttcaagaagagaggatt |
35279272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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