View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15252_low_2 (Length: 573)
Name: NF15252_low_2
Description: NF15252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15252_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 36291933 - 36292328
Alignment:
| Q |
17 |
acaaacaacaaaggaacaggatactactaaaagttccaacagacaaacaaaaaacacctgacaaaaggacacccctgcatgatagattaaaacaaactaa |
116 |
Q |
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| T |
36291933 |
acaaacaacaaatgaacaggatactactaaaagttccaacagacaaacaaaaaacacctgacaaaaggacacc--tgcatgatagattaatacaaactaa |
36292030 |
T |
|
| Q |
117 |
aagaaagacaattccagaattgactacaaccattaacactcatcaagcacagcttctagttatctccataatttccaatcctgtccataatgtttgccac |
216 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36292031 |
aagaaagacaattccagaattgactccaacccttaacactcatcaagcactgcttctagttatctccataatttccaatcctgtccataatgttggccac |
36292130 |
T |
|
| Q |
217 |
ggtctctttgctttctttcaaaactttcacactcctgctcaacttctgtctcttgcctgacattgaaggagactcctcaagcagcctctcaacaccacca |
316 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
36292131 |
ggtctctttgctttctctcaaaactgtcacactcctgctcaacttctgtctcttgcctgatattgaaggagactcctcaagcagcctcttaacaccacca |
36292230 |
T |
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| Q |
317 |
ccacttgaggataacagttcgttacatatctccttctgcaaatcaacattcacaagttcattgatgcttaacatcaaatgcaaagcaataacatcaat |
414 |
Q |
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| | ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
36292231 |
ctagttgaggataacagttcgttgcatatctccttttgcaaatcaacattcacaagttcattaatgcttagcatcaaatgcaaagcaataacatcaat |
36292328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 169 - 482
Target Start/End: Original strand, 36311499 - 36311800
Alignment:
| Q |
169 |
cttctagttatctccataatttccaatcctgtccataatgtttgccacggtctctttgctttctttcaaaactttcacactcctgctcaacttctgtctc |
268 |
Q |
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|||||||||| | ||||| |||||||||||||||||| || ||||| ||||| ||||||||| | | |||||||||||| ||||| || | |||||| |
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| T |
36311499 |
cttctagttaacgccatagactccaatcctgtccataatattggccacagtctccttgctttctctaagaactttcacactgctgcttaatctttgtctc |
36311598 |
T |
|
| Q |
269 |
ttgcctgacattgaaggagactcctcaagcagcctctcaacaccaccaccacttgaggataacagttcgttacatatctccttctgcaaatcaacattca |
368 |
Q |
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|| || || || || ||||| |||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||| |||| | | |
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| T |
36311599 |
ttaccagaaatagatggagattcctcaagcagcctctcaacactgccacca------------agttcattacaaatctccttctgcagatcattgctaa |
36311686 |
T |
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| Q |
369 |
caagttcattgatgcttaacatcaaatgcaaagcaataacatcaatgagccttctctggacaatcttccaatatgcaattagccttgccttcaagtcaaa |
468 |
Q |
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|||||||||||||| | ||||||||||||||||||| |||||||||||| ||| | |||||||||||||| ||||||| ||||||||||||||||| |
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| T |
36311687 |
tcagttcattgatgctaagcatcaaatgcaaagcaatactatcaatgagcctcctcagtacaatcttccaataggcaattaatcttgccttcaagtcaaa |
36311786 |
T |
|
| Q |
469 |
ggcctgagtcaaca |
482 |
Q |
| |
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||||||| |||||| |
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| T |
36311787 |
ggcctgattcaaca |
36311800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 475
Target Start/End: Original strand, 36289027 - 36289313
Alignment:
| Q |
189 |
ttccaatcctgtccataatgtttgccacggtctctttgctttctttcaaaactttcacactcctgctcaacttctgtctcttgcctgacattgaaggaga |
288 |
Q |
| |
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||||||||||||||||||| | || || ||||| || |||||| | | |||||| ||||| | || | ||||| ||||| || || || || ||||| |
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| T |
36289027 |
ttccaatcctgtccataattctggcaacagtctccttactttctctaagaactttgacacttcgacttagcttctccctctttccagaaatagacggaga |
36289126 |
T |
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| Q |
289 |
ctcctcaagcagcctctcaacaccaccaccacttgaggataacagttcgttacatatctccttctgcaaatcaacattcacaagttcattgatgcttaac |
388 |
Q |
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||| |||||||||||||||| ||||||||||||| || || || || ||||| |||||||||||||||||| || | |||||||||||||| ||| |
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| T |
36289127 |
ctcttcaagcagcctctcaatcccaccaccacttggagacaaaagatcattacaaatctccttctgcaaatcattgttaatcagttcattgatgctcaac |
36289226 |
T |
|
| Q |
389 |
atcaaatgcaaagcaataacatcaatgagccttctctggacaatcttccaatatgcaattagccttgccttcaagtcaaaggcctga |
475 |
Q |
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|| ||||||| ||| || ||||||||||| || |||||||||||||| ||||| | ||| |||||||| ||||| |||||| |
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| T |
36289227 |
attaaatgcagagctatgctgtcaatgagcctccttaaaacaatcttccaataagcaatcatcctagccttcaaatcaaaagcctga |
36289313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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