View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15252_low_7 (Length: 279)
Name: NF15252_low_7
Description: NF15252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15252_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 25588029 - 25588182
Alignment:
| Q |
19 |
gatataccatattgtattgaacatatcttgattaatggtatgctataaccatcctttgtcaaaaaagctaaggggtcaaggtggtctcaattttttgatt |
118 |
Q |
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| T |
25588029 |
gatataccatattgtattgaacatatcttgattaatggtatgctataaccatcctttgtcaaaaaagctaaggggtcaaggtggtctaaattttttgatt |
25588128 |
T |
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| Q |
119 |
ttaaaagttaaatataaaaactaaacatgttcggataaaatggagttgaaacaa |
172 |
Q |
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| T |
25588129 |
tcaaacgttaaatataaaaactaaacatgttcggataaaatggagttgaaacaa |
25588182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 25588209 - 25588279
Alignment:
| Q |
199 |
aatgtaacttgtcactactagtggtcgccgactaccaccaccgctcctgatcaacactccatccacctttg |
269 |
Q |
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| T |
25588209 |
aatgtaacttgtcactactagtggtcgccgactaccaccactgctcctgatcaacactccatccacctttg |
25588279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 15851778 - 15851728
Alignment:
| Q |
110 |
tttttgattttaaaagttaaatataaaaactaaacatgttcggataaaatg |
160 |
Q |
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| T |
15851778 |
tttttggttttaaaagttaaatttgaaaacaaaacatgttcgggtaaaatg |
15851728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 16985580 - 16985626
Alignment:
| Q |
20 |
atataccatattgtattgaacatatcttgattaatggtatgctataa |
66 |
Q |
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| T |
16985580 |
atataccaaattgtattgaacatattttgattaatgaaatgctataa |
16985626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 10421001 - 10420961
Alignment:
| Q |
22 |
ataccatattgtattgaacatatcttgattaatggtatgct |
62 |
Q |
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| T |
10421001 |
ataccatattgtattgaacacattttgattaatgatatgct |
10420961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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