View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15253_high_1 (Length: 494)

Name: NF15253_high_1
Description: NF15253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15253_high_1
NF15253_high_1
[»] chr7 (5 HSPs)
chr7 (114-476)||(1480528-1480890)
chr7 (18-112)||(1480939-1481033)
chr7 (367-460)||(43060897-43060986)
chr7 (1-67)||(1481032-1481097)
chr7 (112-173)||(43061410-43061471)
[»] chr6 (1 HSPs)
chr6 (114-476)||(19180332-19180694)
[»] chr4 (1 HSPs)
chr4 (185-328)||(42801375-42801519)
[»] chr1 (3 HSPs)
chr1 (368-460)||(1380306-1380398)
chr1 (368-460)||(7313493-7313585)
chr1 (369-450)||(50862491-50862572)
[»] chr3 (2 HSPs)
chr3 (369-450)||(49233905-49233986)
chr3 (369-450)||(49234476-49234558)
[»] chr2 (1 HSPs)
chr2 (369-450)||(24455812-24455893)
[»] chr8 (1 HSPs)
chr8 (410-450)||(43228048-43228088)


Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 114 - 476
Target Start/End: Complemental strand, 1480890 - 1480528
Alignment:
Q  114 tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgagaaaccctacatatttaagtgagtttggtggagtaaaaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1480890 tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaa 1480791  T
Q  214 tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataattcttttgtcactttggcactttcactgaactaagcttaatg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1480790 tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataatttttttgtcactttggcactttcactgaactaagcttaatg 1480691  T
Q  314 actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctacaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1480690 actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc 1480591  T
Q  414 aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaa 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1480590 aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaa 1480528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 1481033 - 1480939
Alignment:
Q  18 aactcaagaaaggctaaaagtctgtttttcacgagctttcttatactaaaatagaagcctcaatacacaaacaaaattacaccatcaatctccta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1481033 aactcaagaaaggctaaaagtctgtttttcacgagctttcttatactaaaatagaagcctcaatacacaaacaaaattacaccatcaatctccta 1480939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 367 - 460
Target Start/End: Complemental strand, 43060986 - 43060897
Alignment:
Q  367 caaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaa 460  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||||||     ||| |||||||||||||||||||| |||||||||||||||    
T  43060986 caaaaaccagctttgaactatgcagaaaattacctcaaagttgctccaat----gcagaaaatcaccttgaaccaactatgaattatgcagaaa 43060897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1481097 - 1481032
Alignment:
Q  1 tagtacataacacatacaactcaagaaaggctaaaagtctgtttttcacgagctttcttatactaaa 67  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||    
T  1481097 tagtacataacacatacaactcaagaaaggctaaaagtct-tttttcgcgagctttcttattctaaa 1481032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 43061471 - 43061410
Alignment:
Q  112 attgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatg 173  Q
    |||||| || |||||| |||||||| ||||||||||||||||||||| ||||||||||||||    
T  43061471 attgttacaactttcattgtcgtctccaattctcatattgttgcaacatcgtgcatactatg 43061410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 114 - 476
Target Start/End: Complemental strand, 19180694 - 19180332
Alignment:
Q  114 tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgagaaaccctacatatttaagtgagtttggtggagtaaaaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19180694 tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaa 19180595  T
Q  214 tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataattcttttgtcactttggcactttcactgaactaagcttaatg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19180594 tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataatttttttgtcactttggcactttcactgaactaagcttaatg 19180495  T
Q  314 actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctacaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19180494 actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc 19180395  T
Q  414 aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaa 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19180394 aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaa 19180332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 185 - 328
Target Start/End: Original strand, 42801375 - 42801519
Alignment:
Q  185 atatttaagtgagtttggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaatta-atgatattaatataataattcttttgtcac 283  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  42801375 atatttaagtgagttgggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaattatattatattaatataataattcttttgtcac 42801474  T
Q  284 tttggcactttcactgaactaagcttaatgactcagatgttcact 328  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||    
T  42801475 tttggcactttcactaaactgagcttaatgactcagatgttcact 42801519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 460
Target Start/End: Complemental strand, 1380398 - 1380306
Alignment:
Q  368 aaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaa 460  Q
    ||||| |||||||||||| ||||||| |||||||| |||  ||||||||||| | | ||||| | ||| ||||| ||||||||||||||||||    
T  1380398 aaaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaattatgcagaaa 1380306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 460
Target Start/End: Complemental strand, 7313585 - 7313493
Alignment:
Q  368 aaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaa 460  Q
    ||||| |||||||||||| ||||||| |||||||| |||  ||||||||||| | | ||||| | ||| ||||| |||  |||||||||||||    
T  7313585 aaaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctccaaattatgcagaaa 7313493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 450
Target Start/End: Complemental strand, 50862572 - 50862491
Alignment:
Q  369 aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat 450  Q
    |||| ||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||  ||||||||||| ||||||||    
T  50862572 aaaatcagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaactaccttgaaccagctctgaat 50862491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 450
Target Start/End: Original strand, 49233905 - 49233986
Alignment:
Q  369 aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat 450  Q
    |||||||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||| ||||||||||| ||||||||    
T  49233905 aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaat 49233986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 450
Target Start/End: Original strand, 49234476 - 49234558
Alignment:
Q  369 aaaaccagctctgaactttgca-gaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat 450  Q
    |||||||||||| || | |||| |||||| ||||| | || ||||||||||| ||||||||| ||||||||||| ||||||||    
T  49234476 aaaaccagctctaaattatgcaagaaaatcacctcgatctcgctccaaattatgcataaaattaccttgaaccagctctgaat 49234558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 450
Target Start/End: Complemental strand, 24455893 - 24455812
Alignment:
Q  369 aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat 450  Q
    |||||||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||| ||||||||||| ||||||||    
T  24455893 aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaat 24455812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 43228088 - 43228048
Alignment:
Q  410 ctccaaattaagcataaaatcaccttgaaccaactctgaat 450  Q
    |||||||||| ||| ||||| ||||||||||||||||||||    
T  43228088 ctccaaattatgcagaaaattaccttgaaccaactctgaat 43228048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University