View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15253_high_5 (Length: 333)
Name: NF15253_high_5
Description: NF15253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15253_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 40827679 - 40827846
Alignment:
| Q |
1 |
caatgcacatgatgatgaatgtccattgctagctctagtgtccaattatctacttctggaaactcaaaccctagtttcttaaaataaaaatcttgaaaag |
100 |
Q |
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| T |
40827679 |
caatgcacatgatgatgaatgtccattgctagctctagtgtccaattatctacttctggaaactcaaaccctagtttcttaaaataaaaatcatgaaaag |
40827778 |
T |
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| Q |
101 |
aatatatatttactcaaaatgctgcctatactagagttccaagttaaaatgaaaaatgctacctacaa |
168 |
Q |
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| T |
40827779 |
aatatatatttactcaaaatgctgcctatactagagatccaagttaaaatgaaaaatgctacctacaa |
40827846 |
T |
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Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 40827917 - 40827994
Alignment:
| Q |
239 |
gacatcacatattaatgccttacacgtgatgatgatggttgttaatgatatacttctaattatgtagcagctagctct |
316 |
Q |
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| T |
40827917 |
gacatcacatattaatgccttacacgtgatgatgatggttgttaatgatatacttctaattatgtagcagctagctct |
40827994 |
T |
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