View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15253_high_6 (Length: 300)
Name: NF15253_high_6
Description: NF15253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15253_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 35 - 259
Target Start/End: Complemental strand, 37384237 - 37384017
Alignment:
| Q |
35 |
acatgaaactattcaaaatgtatatgataagcaagggctgaagaaaatgaaaaatattcaaaaagaaagatcaggactttttgagccgtatttatgtaac |
134 |
Q |
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| T |
37384237 |
acatgaaactattcaaaatgtatatgataagcaagggctgaagaaaatgaaaa-tattcaaaaagaaagatcaggactttttgagccgtatgtatgtagc |
37384139 |
T |
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| Q |
135 |
agtcaagttcatttggaggttgcagcatcatttactgccggtatataataatatcacaagatgtatacattcatgttatatctagaaaataacaacatca |
234 |
Q |
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| T |
37384138 |
agtcaagttcaattgcaggttgcagcatcatttact---ggtagataataatatcacaagatatatacattcatgttctatcaagaaaataacaacatca |
37384042 |
T |
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| Q |
235 |
ataattcataatatctagaagagga |
259 |
Q |
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||||||||| ||||||||||||||| |
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| T |
37384041 |
ataattcatgatatctagaagagga |
37384017 |
T |
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