View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15253_low_1 (Length: 494)
Name: NF15253_low_1
Description: NF15253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15253_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 114 - 476
Target Start/End: Complemental strand, 1480890 - 1480528
Alignment:
| Q |
114 |
tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgagaaaccctacatatttaagtgagtttggtggagtaaaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1480890 |
tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaa |
1480791 |
T |
|
| Q |
214 |
tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataattcttttgtcactttggcactttcactgaactaagcttaatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1480790 |
tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataatttttttgtcactttggcactttcactgaactaagcttaatg |
1480691 |
T |
|
| Q |
314 |
actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctacaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1480690 |
actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc |
1480591 |
T |
|
| Q |
414 |
aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaa |
476 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1480590 |
aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaa |
1480528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 1481033 - 1480939
Alignment:
| Q |
18 |
aactcaagaaaggctaaaagtctgtttttcacgagctttcttatactaaaatagaagcctcaatacacaaacaaaattacaccatcaatctccta |
112 |
Q |
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| T |
1481033 |
aactcaagaaaggctaaaagtctgtttttcacgagctttcttatactaaaatagaagcctcaatacacaaacaaaattacaccatcaatctccta |
1480939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 367 - 460
Target Start/End: Complemental strand, 43060986 - 43060897
Alignment:
| Q |
367 |
caaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaa |
460 |
Q |
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|||||||||||| |||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||||||| |
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| T |
43060986 |
caaaaaccagctttgaactatgcagaaaattacctcaaagttgctccaat----gcagaaaatcaccttgaaccaactatgaattatgcagaaa |
43060897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1481097 - 1481032
Alignment:
| Q |
1 |
tagtacataacacatacaactcaagaaaggctaaaagtctgtttttcacgagctttcttatactaaa |
67 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |
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|
| T |
1481097 |
tagtacataacacatacaactcaagaaaggctaaaagtct-tttttcgcgagctttcttattctaaa |
1481032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 43061471 - 43061410
Alignment:
| Q |
112 |
attgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatg |
173 |
Q |
| |
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|||||| || |||||| |||||||| ||||||||||||||||||||| |||||||||||||| |
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|
| T |
43061471 |
attgttacaactttcattgtcgtctccaattctcatattgttgcaacatcgtgcatactatg |
43061410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 114 - 476
Target Start/End: Complemental strand, 19180694 - 19180332
Alignment:
| Q |
114 |
tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgagaaaccctacatatttaagtgagtttggtggagtaaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19180694 |
tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaa |
19180595 |
T |
|
| Q |
214 |
tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataattcttttgtcactttggcactttcactgaactaagcttaatg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19180594 |
tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataatttttttgtcactttggcactttcactgaactaagcttaatg |
19180495 |
T |
|
| Q |
314 |
actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctacaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19180494 |
actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc |
19180395 |
T |
|
| Q |
414 |
aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaa |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19180394 |
aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaa |
19180332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 185 - 328
Target Start/End: Original strand, 42801375 - 42801519
Alignment:
| Q |
185 |
atatttaagtgagtttggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaatta-atgatattaatataataattcttttgtcac |
283 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
42801375 |
atatttaagtgagttgggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaattatattatattaatataataattcttttgtcac |
42801474 |
T |
|
| Q |
284 |
tttggcactttcactgaactaagcttaatgactcagatgttcact |
328 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
42801475 |
tttggcactttcactaaactgagcttaatgactcagatgttcact |
42801519 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 460
Target Start/End: Complemental strand, 1380398 - 1380306
Alignment:
| Q |
368 |
aaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaa |
460 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||| ||| ||||||||||| | | ||||| | ||| ||||| |||||||||||||||||| |
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|
| T |
1380398 |
aaaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaattatgcagaaa |
1380306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 460
Target Start/End: Complemental strand, 7313585 - 7313493
Alignment:
| Q |
368 |
aaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaa |
460 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||| ||| ||||||||||| | | ||||| | ||| ||||| ||| ||||||||||||| |
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| T |
7313585 |
aaaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctccaaattatgcagaaa |
7313493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 450
Target Start/End: Complemental strand, 50862572 - 50862491
Alignment:
| Q |
369 |
aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat |
450 |
Q |
| |
|
|||| ||||||| || | |||||||||| ||||| | || ||||||||||| ||| |||| ||||||||||| |||||||| |
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|
| T |
50862572 |
aaaatcagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaactaccttgaaccagctctgaat |
50862491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 450
Target Start/End: Original strand, 49233905 - 49233986
Alignment:
| Q |
369 |
aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat |
450 |
Q |
| |
|
|||||||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||| ||||||||||| |||||||| |
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|
| T |
49233905 |
aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaat |
49233986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 450
Target Start/End: Original strand, 49234476 - 49234558
Alignment:
| Q |
369 |
aaaaccagctctgaactttgca-gaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat |
450 |
Q |
| |
|
|||||||||||| || | |||| |||||| ||||| | || ||||||||||| ||||||||| ||||||||||| |||||||| |
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|
| T |
49234476 |
aaaaccagctctaaattatgcaagaaaatcacctcgatctcgctccaaattatgcataaaattaccttgaaccagctctgaat |
49234558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 450
Target Start/End: Complemental strand, 24455893 - 24455812
Alignment:
| Q |
369 |
aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat |
450 |
Q |
| |
|
|||||||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||| ||||||||||| |||||||| |
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|
| T |
24455893 |
aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaat |
24455812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 43228088 - 43228048
Alignment:
| Q |
410 |
ctccaaattaagcataaaatcaccttgaaccaactctgaat |
450 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
43228088 |
ctccaaattatgcagaaaattaccttgaaccaactctgaat |
43228048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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