View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15253_low_2 (Length: 454)
Name: NF15253_low_2
Description: NF15253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15253_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 212 - 454
Target Start/End: Original strand, 40827442 - 40827685
Alignment:
| Q |
212 |
tcatcaatttagtccatactatttttgaaggaatttagtccatactattaaaatttgaatggatcaattatggattttaatatacttttaaagagtaagt |
311 |
Q |
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| T |
40827442 |
tcatcaatttagtccatactatttttgaaggaatttagtccatactattaaaatttgaatggatcaattatggattttaatatacttttaaagagtaagt |
40827541 |
T |
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| Q |
312 |
tgatagattttactatagtttaaggattcattagtataattatatagtttaatgataaattggagagattgataatttagaggttaacttggtaatttag |
411 |
Q |
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| T |
40827542 |
tgatagattttactatagtttaaggattcattagtataattatatagtttaaagataaattggagagattgataatttagaggttaacttggtaatttag |
40827641 |
T |
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| Q |
412 |
ttaattatat-aaaagtaagaaagcaaaggggtggaacaatgca |
454 |
Q |
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| T |
40827642 |
ttaattatataaaaagtaagaaagcaaaggggtggaacaatgca |
40827685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 40827295 - 40827391
Alignment:
| Q |
67 |
tatagttagtttgggaattataggaagaatgacatccattatatagagaagaatacattactttctaaactatcattcacttttcaatttagtcctt |
163 |
Q |
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| T |
40827295 |
tatagttagtttgggaattatagggagaatgacatccattatatagagaagaatacattactttctaaactatcattcacttttcaatttagtcctt |
40827391 |
T |
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