View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15253_low_4 (Length: 396)
Name: NF15253_low_4
Description: NF15253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15253_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Original strand, 33893606 - 33893974
Alignment:
| Q |
10 |
aggagcacagatgaagaatgaaggttcatcggcacattgtagcttcctggacttcacataatgccaaagagcagctattattctcgggcgagtctcgacc |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33893606 |
aggatcacagatgaagaatgaaggttcatcggcacattgtagcttcctggacttcacataatgccaaagagcagctattattctcgggcgagtctcgacc |
33893705 |
T |
|
| Q |
110 |
tcaacccctaagagtctagacaatggtgctgagaccatgaacttctcaggtgaatatttcaaatctaatttgataactgcagtgaattctttgtctcctt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33893706 |
tcaacccctaagagtctagacaatggtgctgagaccatgaacttctcaggtgaatatttcaaatctaatttgataactgcagtgaattctttgtctcctt |
33893805 |
T |
|
| Q |
210 |
ttctcttaatctcaaagccatcctgttgtttaggcgaatgagcactatcccacacaataatgtgattttcaggataaaggttctgatccaagcatatagt |
309 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33893806 |
ttctcttaacctcaaagccatcctgttgtttaggcgaatgagcactatcccacacaataatgtgattttcaggataaaggttctgatccaagcatatagt |
33893905 |
T |
|
| Q |
310 |
aattttcttgaaaaaatcagaaaactttgtgtcagaaggacttgatctctgcaaaattccagacaaaag |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33893906 |
aattttcttgaaaaaatcagaaaactttgtgtcagaaggacttgatctctgcaaaattccagacaaaag |
33893974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 269
Target Start/End: Original strand, 42820660 - 42820879
Alignment:
| Q |
50 |
agcttcctggacttcacataatgccaaagagcagctattattctcgggcgagtctcgacctcaacccctaagagtctagacaatggtgctgagaccatga |
149 |
Q |
| |
|
||||||||| |||||||||| | |||||||||||| ||||| || || || || || | ||||| |||||| | | ||| ||| |||| || ||||| | |
|
|
| T |
42820660 |
agcttcctgaacttcacatagttccaaagagcagccattatcctaggacgggtatcaaactcaatccctaaaactttagccaacggtgtcgaaaccataa |
42820759 |
T |
|
| Q |
150 |
acttctcaggtgaatatttcaaatctaatttgataactgcagtgaattctttgtctccttttctcttaatctcaaagccatcctgttgtttaggcgaatg |
249 |
Q |
| |
|
||||||| || || || |||| |||| | ||||||||||| || |||||||| ||||| ||||| | |||||| ||||| || || ||||||| | |
|
|
| T |
42820760 |
acttctccggcgagtaattcactcctaacctaataactgcagtaaactctttgtcccctttcctcttcacctcaaaaccatcttgctgcacaggcgaacg |
42820859 |
T |
|
| Q |
250 |
agcactatcccacacaataa |
269 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
42820860 |
agcactatcccacacaataa |
42820879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University