View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15253_low_6 (Length: 324)
Name: NF15253_low_6
Description: NF15253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15253_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 3642398 - 3642677
Alignment:
| Q |
17 |
atttgtttggagtttttgaacatataactgtgaccaattgagattttttgtttcatactcagttataatgccaaacagaaacataacgcacctgcatatt |
116 |
Q |
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| T |
3642398 |
atttgtttggagtttttgaacatataactgtgaccaattgagattttttgtttcatactcagttataatgccaaacagaaacataacgcacctgcaaatt |
3642497 |
T |
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| Q |
117 |
tgtaccttaaaaatctcatttttctatattgcaattgataaacaaatgattgtgctgtccaaaataagctaaaagatcaagtaacttaaattctatagat |
216 |
Q |
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| T |
3642498 |
tgtaccttaaaaatctcatttttctatattgcaattgataaacaaatgattgtgctgtccaaaataagctaaaagatcaagtaacttaaattcta----- |
3642592 |
T |
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| Q |
217 |
gaatttatgtatgctaacatgtgttttctttcaaatagtgaggtagcaagattcaacaattttctacggtttaaggctatgtctaattgtttccctttg |
315 |
Q |
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| T |
3642593 |
--------------taacatgtgttttctttcaaatagtgaggtagcaagattcaacaattttctacggtttaaggctatgtctaattgtttccctttg |
3642677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 292
Target Start/End: Original strand, 39542997 - 39543173
Alignment:
| Q |
115 |
tttgtaccttaaaaatctcatttttctatattgcaattgataaacaaatgattgtgctgtccaaaataagctaaaagatcaagtaacttaaattctatag |
214 |
Q |
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| T |
39542997 |
tttgtacctttaaaatctcccttt-ctatattgcaaattataaacaaatgattttgctgtccaacataagcttaaagatcaagtaacttgaactatatgg |
39543095 |
T |
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| Q |
215 |
atgaatttatgtatgctaacatgtgttttctttcaaatagtgaggtagcaagattcaacaattttctacggtttaagg |
292 |
Q |
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| T |
39543096 |
acgaatttatgcatgccaatatgtgttttctttcaaattgtgaggtagcaagattcaacaattttaaacagtttaagg |
39543173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 18075113 - 18075222
Alignment:
| Q |
169 |
tgctgtccaaaataagctaaaagatcaagtaacttaaattctatagatgaatttatgtatgctaacatgtgttttctttcaaatagtgaggtagcaagat |
268 |
Q |
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||||||||||||||||||| || || | | ||||| ||||||||||||||||||| || ||||| |||||| ||||||||||| ||||| ||||||||| |
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| T |
18075113 |
tgctgtccaaaataagctataa-atgaggcaacttgaattctatagatgaatttacgtgtgctaccatgtgacttctttcaaatcgtgagatagcaagat |
18075211 |
T |
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| Q |
269 |
tcaacaatttt |
279 |
Q |
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| T |
18075212 |
ccaacaatttt |
18075222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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