View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15253_low_8 (Length: 282)
Name: NF15253_low_8
Description: NF15253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15253_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 54656 - 54922
Alignment:
| Q |
1 |
gcatttcctatggaacaagaatcctgtcaagtatgatatatttcatatgatccttcactctatttggtacaatagagtcttctctgccactagttagata |
100 |
Q |
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| T |
54656 |
gcatttcctttggaacaagaatcctgtcaagtatgatatatttcatatgatccttcactctatttggtacaatagagtcttctctgccactagttagata |
54755 |
T |
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| Q |
101 |
acttggagataaagtaggaacaggttgtatannnnnnncttttgggattcttagctgagaaattttcgtcatgagtaaaaatatagataaggtcatttat |
200 |
Q |
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| T |
54756 |
acttggagataaagtaggaacaggttgtatatttttttcttttgggattcttagctgagaaattttcgtcatgagtaaaaatatagataaggtcatttat |
54855 |
T |
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| Q |
201 |
ttgtgaatttgtgtatatctttggaggtttgggccttaataaagtcgcaatctaacaccaactattt |
267 |
Q |
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| T |
54856 |
ttgtgaatttgtgtatatctttggagctttgggccttaataaagtcgcaatctaacacgaactattt |
54922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 40752996 - 40753050
Alignment:
| Q |
22 |
tcctgtcaagtatgatatatttcatatgatccttcactctatttggtacaataga |
76 |
Q |
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| T |
40752996 |
tcctgtcaagtatgacttatttcatatgattcttcactctatttggaacaataga |
40753050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 51208259 - 51208329
Alignment:
| Q |
17 |
aagaatcctgtcaagtatgatatatttcatatgatccttcactctatttggtacaatagagtcttctctgc |
87 |
Q |
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| T |
51208259 |
aagagtcctgtcaagtatgatatatttcacatgatactccattctatttggtacaacagagtcttcactgc |
51208329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 41687890 - 41687946
Alignment:
| Q |
22 |
tcctgtcaagtatgatatatttcatatgatccttcactctatttggtacaatagagt |
78 |
Q |
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| T |
41687890 |
tcctgtcaaatatgatatatatcacatggtacttcattctatttggtacaatagagt |
41687946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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