View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_high_10 (Length: 579)
Name: NF15254_high_10
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 11 - 561
Target Start/End: Original strand, 52175619 - 52176169
Alignment:
| Q |
11 |
cataggagaaaatagaaacttaaaatactagaaatgagactgtgccccgaaacaagtaataatggcatcaaagcttcacaagtttgctataatcaagaaa |
110 |
Q |
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| T |
52175619 |
cataggagaaaatagaaacttaaaatactagaaatgagactgcgccccgaaacaagtaataatggcatcaaagcttcacaagtttgctataatcaagaaa |
52175718 |
T |
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| Q |
111 |
aattattctctattcaacaaataaccatctcttgtgcttgtgccactccccctccccttcaaagtccctaattaattatgtaaaaaagtatgtggctgca |
210 |
Q |
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| T |
52175719 |
aattattctctattcaacaaataaccatctcttgtgcttgtgccactccccctccccttcaaagtccctaattaattatgtaaaaaagtatgtggctgca |
52175818 |
T |
|
| Q |
211 |
agataggggagtgtcgtgtgcggacagctgtcccaattgcgagactaattatgaaaatgattggcacgtgtttattggttgcgaggctgcaatacaagtt |
310 |
Q |
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| T |
52175819 |
agataggggagtgtcgtgtgcggacagctgtcccaattgcgagactaattatgaaaatgattggcacgtgtttattggttgcgaggctgcaatacaagtt |
52175918 |
T |
|
| Q |
311 |
tggcaagtagctgggctatgggatataataatggatgctgctgctgctgtatctaactttgctgaatgcattttttagttattatgcaggtgttctaaac |
410 |
Q |
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| T |
52175919 |
tggcaagcagctgggctatgggatataataatggatgctgctgctgctgtatctaactttgctgaatgcattttttagttattatgcaggtgttctaaac |
52176018 |
T |
|
| Q |
411 |
aaatgtgtcaggacattgtaataatgttatggtgcttgtggcgtcgacaaaacgataaggtgtgggagggagacatgaaagatgtgcggctggctgtgca |
510 |
Q |
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| T |
52176019 |
aaatgtgccaggacattgtaataatgttatggtgcttgtggcgtcgacaaaacgataaggtgtgggagggagacatgaaagatgtgcggctggctgtgca |
52176118 |
T |
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| Q |
511 |
tttagcgcgcgaggttctgaaacagtggcagactgttcgggagaaaacggt |
561 |
Q |
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| T |
52176119 |
tttagcgcgcgaggttctgaaacaatggcagactgttcgggagaaaacggt |
52176169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 198 - 558
Target Start/End: Original strand, 25500231 - 25500587
Alignment:
| Q |
198 |
gtatgtggctgcaagataggggagtgtcgtgtgcggacagctgtcccaattgcgagactaattatgaaaatgattggcacgtgtttattggttgcgaggc |
297 |
Q |
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||||| |||||||||||||||||||||||||| |||| ||||| | || |||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
25500231 |
gtatgcggctgcaagataggggagtgtcgtgtacggatagctgcctca-ttgcgagactaattatgaaaatgattggcacgtgtttattggctgtgaggc |
25500329 |
T |
|
| Q |
298 |
tgcaatacaagtttggcaagtagctgggctatgggatataataatggatgctgctgctgctgtatctaactttgctgaatgcattttttagttattatgc |
397 |
Q |
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| T |
25500330 |
tgcaaaacaagtgtggcaagtagctgggctatgggatataataatggaagctgttgctgtt---tctaattttgctgaatgtatttttcagttattatgc |
25500426 |
T |
|
| Q |
398 |
aggtgttctaaacaaatgtgtcaggacattgtaataatgttatggtgcttgtggcgtcgacaaaacgataaggtgtgggagggagacatgaaagatgtgc |
497 |
Q |
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|||||||||||||| | ||| || ||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
25500427 |
aggtgttctaaacagaagtgccacgacattgcaatgatattatggtgcttgtggcgtcgacgaaacgataaggtgtgggagggagaaatgaaagatgtgc |
25500526 |
T |
|
| Q |
498 |
ggctggctgtgcatttagcgcgcgaggttctgaaacagtggcagactgttcgggagaaaac |
558 |
Q |
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| T |
25500527 |
agatggctgtgtatttagcgcgagaggttcttaagcagtggcaggttgttcaagagaaaac |
25500587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 246 - 521
Target Start/End: Complemental strand, 6508829 - 6508555
Alignment:
| Q |
246 |
attgcgagactaattatgaaaatgattggcacgtgtttattggttgcgaggctgcaatacaagtttggcaagtagctgggctatgggatataataatgga |
345 |
Q |
| |
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||||||||| || || ||||||||||| ||| | |||| |||||||||||||| | || ||| |||||||| ||||| || |||| || || || |
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| T |
6508829 |
attgcgagaatagttgcgaaaatgattgacactgggttataggttgcgaggctgccaaactagtgtggcaagttgctggcctgcgggaattagtatgaga |
6508730 |
T |
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| Q |
346 |
tgctgctgctgctgtatctaactttgctgaatgcattttttagttattatgcaggtgttctaaacaaatgtgtcaggacattgtaataatgttatggtgc |
445 |
Q |
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| T |
6508729 |
cgctgctgctgctgtttctaactttgcagaatgcatttttcggttattgtgcagg-gttccgatcaaacatgtcaagatatcgcgatgatgttatggtgt |
6508631 |
T |
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| Q |
446 |
ttgtggcgtcgacaaaacgataaggtgtgggagggagacatgaaagatgtgcggctggctgtgcatttagcgcgcg |
521 |
Q |
| |
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|| |||||| || || |||| |||| ||| || || |||||||| |||||||||| |||||||||||| |||| |
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| T |
6508630 |
ttatggcgtagaaggaataataaagtgtaggaaggtgatatgaaagaagtgcggctggttgtgcatttagctcgcg |
6508555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 333
Target Start/End: Complemental strand, 38196388 - 38196312
Alignment:
| Q |
257 |
aattatgaaaatgattggcacgtgtttattggttgcgaggctgcaatacaagtttggcaagtagctgggctatggga |
333 |
Q |
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||||| || |||||| ||||||| ||||||||||| || || |||| |||||||||||||| |||||| ||||||| |
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| T |
38196388 |
aattacgagaatgataggcacgtctttattggttgtgaagcggcaaagcaagtttggcaagttgctgggttatggga |
38196312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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