View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_high_12 (Length: 572)
Name: NF15254_high_12
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 7 - 547
Target Start/End: Original strand, 36679856 - 36680390
Alignment:
| Q |
7 |
gtgaaaagaaaggagctcagggatgagagcatgtctaccaaggtgccaagaaacataaggagagataggacctcttttgaggatagaaaccatgtttttg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36679856 |
gtgaaaagaaaggagctcagggatgagagcatgtctaccaaggtgccaagaaacataaggagagataggacctcttttgaggatagaaaccatgtttttg |
36679955 |
T |
|
| Q |
107 |
actctgtctgagttttcaggatgtttttccaatatgtctaagaaaccggggtcaattcctgagtcaaaaactccattgccggtatcgtgtttgagcattc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36679956 |
actctgtctgagttttcaggatgtttttccaatatgtctaagaaaccggggtcaattcctgtgtcaaaaactccattgccggtatcgtgtttgagcattc |
36680055 |
T |
|
| Q |
207 |
cttcatgccagaaaacgtcgattttgttcacactggaagattctgctgccgcatctctattcgttgccatttgaatgaagggagggttggtcggtcactg |
306 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
36680056 |
cttcatgccagaaaacttcgattttgttcacactggaagattctgctgccgcatctctattcgttgccatttgaatcaagagagggttggtcggtcactg |
36680155 |
T |
|
| Q |
307 |
gttcaacgatgttgatgttgatgttgattttgattgggattcattgaatttcacttgtgtgattttggggttttgtgaggatgatgcaaaaccccaaatc |
406 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36680156 |
gttcaacgatgttgatgttgatg------ttgattgggattcattggatttcacttgtgtgattttggggttttgtgaggatgatgcaaaaccccaaatc |
36680249 |
T |
|
| Q |
407 |
aaaagtattt-ggtatacaagtgagagtataaatgataaaatttaaaacaaaaataatttaagtacatcaagtaacatgacttttaatttttatattatc |
505 |
Q |
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| T |
36680250 |
agaagtctttgggtatacaagt--gagtataaatgataaaatttaaaacaaaaataatttaagtacatcacgtaatatgatttttattttttatattatg |
36680347 |
T |
|
| Q |
506 |
attc-cgtctgtccaaataaattttatttaaagttgtgtctat |
547 |
Q |
| |
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|||| || |||||||||||||||||||||| ||||||||||| |
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| T |
36680348 |
attcttgtgtgtccaaataaattttatttaatgttgtgtctat |
36680390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 467
Target Start/End: Complemental strand, 32578309 - 32578275
Alignment:
| Q |
433 |
tataaatgataaaatttaaaacaaaaataatttaa |
467 |
Q |
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||||||||||||||||||||| ||||||||||||| |
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| T |
32578309 |
tataaatgataaaatttaaaagaaaaataatttaa |
32578275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 467
Target Start/End: Original strand, 51818421 - 51818454
Alignment:
| Q |
434 |
ataaatgataaaatttaaaacaaaaataatttaa |
467 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |
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| T |
51818421 |
ataaatgataaaatttaaaagaaaaataatttaa |
51818454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 466
Target Start/End: Original strand, 30785499 - 30785531
Alignment:
| Q |
434 |
ataaatgataaaatttaaaacaaaaataattta |
466 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
30785499 |
ataaatgataaaatttaaaagaaaaataattta |
30785531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 466
Target Start/End: Complemental strand, 17056066 - 17056034
Alignment:
| Q |
434 |
ataaatgataaaatttaaaacaaaaataattta |
466 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
17056066 |
ataaatgataaaatttaaaagaaaaataattta |
17056034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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