View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_high_14 (Length: 554)
Name: NF15254_high_14
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 61 - 526
Target Start/End: Original strand, 21898119 - 21898594
Alignment:
| Q |
61 |
aaaaggttcacgggatacgtgtgtagatagggtggaggggaatgg------------agaatggagaggttgaaagagggaagggaggtccatgccttgg |
148 |
Q |
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| T |
21898119 |
aaaaggttcacgagatatgtgtgtagatagggtggaggggaatggagattgtgatggagaatggagaggttgaaagagggaagggaggtccatgccttgg |
21898218 |
T |
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| Q |
149 |
aagtattaccatgtaaagtggtgttggattagtttgagtacaattttgtgggtgttttaccttttcgtattgaactgaaagtgttgcacacttcaatctt |
248 |
Q |
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| T |
21898219 |
aagtattaccatgtaaagtggtgttggattagttggagtacaattttgtgggtgttttagctattcgtattgaactgaaagtgttgcagacttcaatctt |
21898318 |
T |
|
| Q |
249 |
tatggagggttggaatggcatcaagggggatgctatgggggtcgacatgggactgttatgaagcaaggtgatcgcggaaatagaagaagataaaataaca |
348 |
Q |
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| T |
21898319 |
tatggagggttggaatggcatcaagatgtatgccatgggggtcgacatggtactgttatgaagcaaggtgattgaggaaatagaagaagataaaagaaca |
21898418 |
T |
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| Q |
349 |
aaagacaagtggtgggagaagatatttaaggagatcaaaaggtggtcaccacaatactattgagtttggtgcctggaaataaatcttttttgtctgaann |
448 |
Q |
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| T |
21898419 |
aaagacatgtggtgggagaagatatttaaggagatcaaaaggtggtcaccataatactattgagtttggtgcctggaaataaat-ttttttgtctgaatt |
21898517 |
T |
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| Q |
449 |
nnnnnctaacattaattgaggggttgaagtaaagaaaaaagaaaccttagtgtccgagatcaaagttctctcaaatgt |
526 |
Q |
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| T |
21898518 |
tttttctaacattaattgaggggtttaagtaaagaaaaaa-aaaccttagtgtctgagatcaaagttctctcaaatgt |
21898594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 539
Target Start/End: Original strand, 21898771 - 21898800
Alignment:
| Q |
510 |
aaagttctctcaaatgttagagaccaaaat |
539 |
Q |
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| T |
21898771 |
aaagttctctcaaatgttagagaccaaaat |
21898800 |
T |
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