View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15254_high_17 (Length: 480)
Name: NF15254_high_17
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 43827543 - 43827087
Alignment:
| Q |
1 |
gatattggagtagcttgcatggaagatgacttgtctccatcatgtgaatctcttgaaggactttgtacatagtatacaggtctctttggagatcttgatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43827543 |
gatattggagtagcttgcatggaagatgacttgtctccatcatgtgaatctcttgaaggactttgtacatagtatacaggtctctttggagatcttgatg |
43827444 |
T |
|
| Q |
101 |
gtgaagatggagctaaactagttatatcagattctgattttgcagaaagcatagttacttatgtatattaatatcaatttcaagtgtcacttnnnnnnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43827443 |
gtgaagatggagctaaactagttatatcagattctgattttgcagaaagcatagttacttatgtatattaatatcaatttcaagtgtcacttacacacac |
43827344 |
T |
|
| Q |
201 |
nnnnnnnnttgaagtttgtacctatgcaaatgcaatattatagagagcttaatagtaactagtactagaaaacaatattgagaacttgtgttactgaatt |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43827343 |
gcacacacttgaagtttgtacatatgcaaatgcaatattatagagagcttaatagtaactagtactagaaaacaatattgagaacttgtgttactgaatt |
43827244 |
T |
|
| Q |
301 |
cataaaactaagcagtgtatatgtatgcatgtgttaagtgtatatcagcaaaagtgaacaagtagcaagaaactctcaaagaaatggaaataaatgagat |
400 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43827243 |
catgaaactaagcagtgtatatgtatgcatgtgttaagtgtatatcagcaaaagtgaacaagtagcaagaaactctcaaagaaatggaaataaatgagat |
43827144 |
T |
|
| Q |
401 |
aatggtttttgaatagatatgatatgatatgatgagtttgtttgcagtttgcaaggaaatgg |
462 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
43827143 |
aatggtttttgaatagatatgata-----tgatgagtttgtttgcactttgcaaggaaatgg |
43827087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 17649201 - 17649140
Alignment:
| Q |
375 |
ctcaaagaaatggaaataaatgagataatggtttttgaatagatatgatatgatatgatgag |
436 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||| |||||| || |||||| |||||||| |
|
|
| T |
17649201 |
ctcaaagaaatgggaacaaatgagataatggtgttttaatagacatcatatgacatgatgag |
17649140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 410
Target Start/End: Original strand, 1680851 - 1680921
Alignment:
| Q |
338 |
gtgtatatcagcaaaagtgaacaagtagcaagaaactctcaaagaaatggaaataaatgagataatggttttt |
410 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||| ||||||||||||| || ||||||||||||| |||| |
|
|
| T |
1680851 |
gtgtatatcagcaaaaaagaacaggtagtaagaaa--ctcaaagaaatggcaacgaatgagataatgggtttt |
1680921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University