View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_high_18 (Length: 477)

Name: NF15254_high_18
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_high_18
NF15254_high_18
[»] chr6 (24 HSPs)
chr6 (158-458)||(5443943-5444243)
chr6 (141-457)||(5184822-5185138)
chr6 (147-458)||(5394172-5394483)
chr6 (156-450)||(5264221-5264515)
chr6 (158-433)||(5107770-5108045)
chr6 (205-456)||(5393001-5393252)
chr6 (158-404)||(5422042-5422288)
chr6 (156-450)||(5331749-5332044)
chr6 (158-380)||(5429438-5429660)
chr6 (166-380)||(5092785-5092996)
chr6 (165-412)||(5340400-5340647)
chr6 (165-414)||(5149711-5149960)
chr6 (166-380)||(5160541-5160755)
chr6 (168-306)||(5360766-5360904)
chr6 (157-412)||(5173981-5174236)
chr6 (157-404)||(5692942-5693189)
chr6 (158-447)||(5070393-5070682)
chr6 (166-383)||(5137640-5137857)
chr6 (160-380)||(5366347-5366567)
chr6 (166-405)||(5380214-5380453)
chr6 (158-458)||(5358099-5358399)
chr6 (166-363)||(5272857-5273054)
chr6 (166-253)||(5139719-5139806)
chr6 (313-404)||(5077102-5077193)
[»] scaffold0864 (1 HSPs)
scaffold0864 (156-450)||(4254-4548)
[»] chr2 (1 HSPs)
chr2 (156-450)||(22589083-22589377)
[»] chr7 (3 HSPs)
chr7 (158-280)||(34719906-34720028)
chr7 (166-281)||(34715142-34715257)
chr7 (210-380)||(34729707-34729877)
[»] chr3 (1 HSPs)
chr3 (157-458)||(48016088-48016388)
[»] scaffold0294 (1 HSPs)
scaffold0294 (171-287)||(6584-6700)
[»] chr4 (2 HSPs)
chr4 (166-261)||(25566888-25566983)
chr4 (343-411)||(25567065-25567133)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 158 - 458
Target Start/End: Original strand, 5443943 - 5444243
Alignment:
Q  158 aaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtt 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5443943 aaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtt 5444042  T
Q  258 tttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaa 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  5444043 tttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgaacaatctcaaatttctataattgttttttcaaaaa 5444142  T
Q  358 attatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtaga 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5444143 attatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtaga 5444242  T
Q  458 t 458  Q
    |    
T  5444243 t 5444243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 141 - 457
Target Start/End: Complemental strand, 5185138 - 5184822
Alignment:
Q  141 agtaggccggaactagtaaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaa 240  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||| | ||||||||||    
T  5185138 agtagaccggaactagtaaggatccatgatgtgttcttaagttttagaggggaagatactcgttcttcctttacttcacatctctattccgctcttcaaa 5185039  T
Q  241 aggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctat 340  Q
    |||  ||||||||| ||||| |||| ||||||||||||||||||||| || | || ||| |||||||||||||  ||||||| ||||||||| |||||||    
T  5185038 aggacggaattaagatttttttagatgataatgagcttcaaagaggagattatatatcaacatcattatcacgctcaattgaacagtctcaagtttctat 5184939  T
Q  341 tattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcgtaaaaacataggacaagtggttgtgcca 440  Q
     ||||||||||| |||||||||||  ||||| ||||||||||| |||||||||  || |||||||| ||||| | || |||||||||||| ||||| |||    
T  5184938 aattgttttttccaaaaattatgccaattcgagatggtgtttggatgaattggaaaagataatgaagtgtcgcagaaccataggacaagttgttgttcca 5184839  T
Q  441 gtgttctaccgtgtaga 457  Q
    |||||||||| ||||||    
T  5184838 gtgttctaccatgtaga 5184822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 147 - 458
Target Start/End: Original strand, 5394172 - 5394483
Alignment:
Q  147 ccggaactagtaaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctg 246  Q
    ||||||| ||||||||| || ||||||||||||||||| |||||| | || |||||| |||| |||||||||||||| ||||| |||||| ||||   ||    
T  5394172 ccggaacgagtaaggattcacgacgtgttcttaagtttcagaggggaggacactcgttcttcattcacttcacatctctatgcggctcttaaaaattttg 5394271  T
Q  247 gaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgt 346  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||  ||||||| ||||||||||||  |||||||| ||||||| ||||||||| |||||    
T  5394272 gaattaaggtttttagagatgataatgagcttcaaagaggagattgcatttcaacatcattatcacacgcaattgaacagtctcgaatttctataattgt 5394371  T
Q  347 tttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttc 446  Q
    ||| ||||| |||||||||||||||||||||||| ||||||||||||  ||||||||||| ||||  | || ||| || ||||||||||| |||||||||    
T  5394372 tttctcaaagaattatgctgattcgcgatggtgtctgaatgaattggaaaaaataatgaagtgtcaaagaaccattgggcaagtggttgttccagtgttc 5394471  T
Q  447 taccgtgtagat 458  Q
    |||| |||||||    
T  5394472 taccatgtagat 5394483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 156 - 450
Target Start/End: Complemental strand, 5264515 - 5264221
Alignment:
Q  156 gtaaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaagg 255  Q
    |||||||| |||||||||||||||||||| || ||  | ||||||||| ||||||||  ||||||||| ||||| ||||||||||| ||||||||||| |    
T  5264515 gtaaggattcatgacgtgttcttaagtttcaggggagaggatactcgttcttccttcgtttcacatctatatgcagctcttcaaaatgctggaattaaag 5264416  T
Q  256 tttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaa 355  Q
    |||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||  ||||  |||||||| | |||||||| |||||    
T  5264415 tttttagagacgataatgagcttcaaagaggagatcacatttcaacatcattattacgtgcaattgaagagtccaaaatttctttaattgttttctcaaa 5264316  T
Q  356 aaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctacc 450  Q
    |||||| ||  ||||| ||||||| ||| ||||| ||   ||||||||||| |||  || || ||||||||||  |||||||||| |||||||||    
T  5264315 aaattacgccaattcgagatggtgcttggatgaagtgaaaaaaataatgaagtgttatagaaccataggacaaaaggttgtgccattgttctacc 5264221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 158 - 433
Target Start/End: Complemental strand, 5108045 - 5107770
Alignment:
Q  158 aaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtt 257  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||| || |||    
T  5108045 aaggatccatgacgtgttcctaagtttcagaggcaaagatactcgtgcttccttcacttcacatctctatgcttctcttcagaacgctggaatcaacgtt 5107946  T
Q  258 tttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaa 357  Q
    |||| ||||||| ||  |||| |||||||| ||  |||||||  |||| ||  ||||||||||||  | ||| |||||||||||||  |||| |||||||    
T  5107945 tttagagacgatgattcgcttaaaagaggacattgcatttcaaaatcaataaaacgagcaattgaagaatctgaaatttctattatcattttctcaaaaa 5107846  T
Q  358 attatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcgtaaaaacataggacaagtggt 433  Q
    |||||||  | ||||| |||||| | ||||| ||| |||  |||||| | ||||| | || |||||| || |||||    
T  5107845 attatgcgaaatcgcgttggtgtctaaatgagttgttgacgataatggagtgtcgcagaagcatagggcaggtggt 5107770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 205 - 456
Target Start/End: Original strand, 5393001 - 5393252
Alignment:
Q  205 cttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcatcatc 304  Q
    |||||||||||||||||||   ||||||||||||||||  | ||||||  ||||||| | ||||||||| ||||||||||||| ||||||||||| ||||    
T  5393001 cttccttcacttcacatctccttgctgctcttcaaaagtttcgaattacagtttttacatacgataatgtgcttcaaagaggagatcacatttcaacatc 5393100  T
Q  305 attatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatg 404  Q
    ||||||| | ||||| |   ||||| |||||| ||| |||||||| ||||||||||||||  ||||| || |||||||| |||||||||  | |||| ||    
T  5393101 attatcaagtgcaatcggagagtctaaaatttttataattgttttctcaaaaaattatgccaattcgagacggtgtttggatgaattggaaataatagtg 5393200  T
Q  405 aattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtag 456  Q
    || ||| ||| || ||||||| |||||||||| || |||||||||| |||||    
T  5393201 aactgtggtagaaccataggagaagtggttgttccggtgttctaccatgtag 5393252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 158 - 404
Target Start/End: Original strand, 5422042 - 5422288
Alignment:
Q  158 aaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtt 257  Q
    |||||||||||| ||||||||||||||||||||  | ||||||||||| || |||||||||||||| |||||| ||||||||||    |||||||| |||    
T  5422042 aaggatccatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatctctatgcttctcttcaaaattacggaattaaagtt 5422141  T
Q  258 tttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaa 357  Q
    || |  |||||| ||  ||||||||||||| ||||||||||| ||||| |   |||||||||||| ||||||| ||| ||||| || ||||| |||| ||    
T  5422142 ttcagggacgatgattcgcttcaaagaggagatcacatttcaacatcactcctacgagcaattgaacagtctcgaatgtctatcatagttttctcaacaa 5422241  T
Q  358 attatgctgattcgcgatggtgtttgaatgaattggtgaaaataatg 404  Q
    |||| || ||||| | ||||||| |  |||| ||| |||||||||||    
T  5422242 attacgcggattcacaatggtgtcttgatgagttgttgaaaataatg 5422288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 450
Target Start/End: Complemental strand, 5332044 - 5331749
Alignment:
Q  156 gtaaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaagg 255  Q
    |||||||| || ||| | ||||||||||| || ||| | ||||||| | ||||||||  ||||||||| ||||| ||||||||||| |||||||||||      
T  5332044 gtaaggattcacgacatattcttaagtttcaggggggaggatactcattcttccttcgtttcacatctatatgcagctcttcaaaatgctggaattaaaa 5331945  T
Q  256 tttttata-gacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaa 354  Q
    |||||| | || || ||||| |||||  ||||| |||||||||||  ||| |||| ||| ||||||||  ||||  |||||||| | |||||||| ||||    
T  5331944 tttttaaaagatgacaatgaacttcacggaggagatcacatttcaaaatcgttattacgtgcaattgaagagtccaaaatttctttaattgttttctcaa 5331845  T
Q  355 aaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctacc 450  Q
    |||||||||   ||||| ||||||||||| ||||||||   ||||||||||| |||  || || |||||||| |  ||||||||||||||||||||    
T  5331844 aaaattatgtcaattcgagatggtgtttggatgaattgaaaaaaataatgaagtgttatagaaccataggactaaaggttgtgccagtgttctacc 5331749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 158 - 380
Target Start/End: Original strand, 5429438 - 5429660
Alignment:
Q  158 aaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtt 257  Q
    ||||||||||||||||||| |||||||||||||  |||||||||| |  || |||||||||||||| |||||| |||||||||| ||||||||||  |||    
T  5429438 aaggatccatgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctggaattactgtt 5429537  T
Q  258 tttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaa 357  Q
    ||||  || |||  |   ||| || ||||| ||||||||||| || |||||||||  |||||||| ||||||| ||||||| ||||  ||||||||| ||    
T  5429538 tttagggatgatgtttctcttaaaggaggagatcacatttcaacaacattatcacacgcaattgaacagtctcgaatttctgttatcattttttcaacaa 5429637  T
Q  358 attatgctgattcgcgatggtgt 380  Q
    |||| || || ||||||||||||    
T  5429638 attacgcggaatcgcgatggtgt 5429660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 166 - 380
Target Start/End: Original strand, 5092785 - 5092996
Alignment:
Q  166 atgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttataga 265  Q
    |||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| |||||| | |||||||| ||||||||||| |||||||  ||    
T  5092785 atgaagtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgcttcacttcaaaatgctggaattaatgtttttaggga 5092884  T
Q  266 cgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgct 365  Q
     ||| ||  ||||||||||||| |||| ||   ||||||||||   | |   |||||  |||||| ||||||| | ||||||||||||| |||||||||     
T  5092885 tgatgattcgcttcaaagaggagatcaaat---atcatcattacttcaattgattgaagagtctcgaatttctgtgattgttttttcaagaaattatgca 5092981  T
Q  366 gattcgcgatggtgt 380  Q
    |||||||||||||||    
T  5092982 gattcgcgatggtgt 5092996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 165 - 412
Target Start/End: Original strand, 5340400 - 5340647
Alignment:
Q  165 catgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatag 264  Q
    ||||| ||||| || |||||||||||||| || |||||||  ||||||||||||||||| |||||||| |||||||| ||||||||||  ||||||| ||    
T  5340400 catgaagtgtttttgagttttagagggaaggacactcgtgtatccttcacttcacatctctatgctgcacttcaaaatgctggaattactgtttttagag 5340499  T
Q  265 acgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgc 364  Q
    ||||| ||  ||||||||||||  |||| |||||| ||||| ||  |||| ||||||| |   ||||||||||| | |||||||| || |  |||||| |    
T  5340500 acgatgattcgcttcaaagaggtgatcaaatttcaacatcactactacgaacaattgaactaactcaaatttctgtgattgttttctcgagcaattattc 5340599  T
Q  365 tgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcg 412  Q
     |||||   ||||||| || |||||||||||| ||||||||| |||||    
T  5340600 cgattcaaaatggtgtctggatgaattggtgagaataatgaaatgtcg 5340647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 165 - 414
Target Start/End: Complemental strand, 5149960 - 5149711
Alignment:
Q  165 catgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatag 264  Q
    ||||| ||||||||||||||||||||| ||||||| || || || |||||||||||||| |||||| |||||||||| ||||||||||| |||||||  |    
T  5149960 catgaagtgttcttaagttttagaggggaagatacgcgcgcatcattcacttcacatctctatgcttctcttcaaaatgctggaattaaagtttttaggg 5149861  T
Q  265 acgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgc 364  Q
    | ||| ||   ||| |||||||| ||||||||||| ||||| ||   | ||| ||  |  ||||||| || ||| | ||||||||||||| ||| |||||    
T  5149860 atgatgattctcttaaaagaggagatcacatttcaacatcaatacatctagctatccaaaagtctcagatctctgtgattgttttttcaagaaactatgc 5149761  T
Q  365 tgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcgta 414  Q
      |||||||||||||| |  | || ||||||||||||||| |||||||||    
T  5149760 aaattcgcgatggtgtctcgaagagttggtgaaaataatggattgtcgta 5149711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 166 - 380
Target Start/End: Complemental strand, 5160755 - 5160541
Alignment:
Q  166 atgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttataga 265  Q
    |||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||| |||||||| |||||| |||| |||||||  ||    
T  5160755 atgaagtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgctgcacttcaaaacgctggacttaacgtttttaggga 5160656  T
Q  266 cgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgct 365  Q
    |||| ||   ||| |||||||| |||| ||  || ||||||||   |   | |||||  | |||| ||||||| | ||||||||||||| |||||||||     
T  5160655 cgatgattctcttgaaagaggagatcaaataccaacatcattacttcattcgattgaagaatctcgaatttctgtgattgttttttcaagaaattatgcg 5160556  T
Q  366 gattcgcgatggtgt 380  Q
    |||||||||||||||    
T  5160555 gattcgcgatggtgt 5160541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 168 - 306
Target Start/End: Original strand, 5360766 - 5360904
Alignment:
Q  168 gacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacg 267  Q
    |||||||||||||||||||| ||  | ||||||||| ||||||||||||||||||| || ||||| |||||||| | ||||||||| ||||||| |||||    
T  5360766 gacgtgttcttaagttttaggggagaggatactcgttcttccttcacttcacatctctacgctgcacttcaaaatgttggaattaaagtttttaaagacg 5360865  T
Q  268 ataatgagcttcaaagaggatatcacatttcatcatcat 306  Q
    ||  ||||||||| |||||||||||||| ||| ||||||    
T  5360866 atggtgagcttcatagaggatatcacatctcaacatcat 5360904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 157 - 412
Target Start/End: Original strand, 5173981 - 5174236
Alignment:
Q  157 taaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggt 256  Q
    |||||| | |||| |||||||||||||| |||||  | || || ||  |||| ||||||||||| || || ||| ||||||||||   ||||||||  ||    
T  5173981 taaggagctatgaagtgttcttaagtttcagaggcgaggacacgcgcacttcattcacttcacacctatacgcttctcttcaaaacaatggaattagcgt 5174080  T
Q  257 ttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaa 356  Q
    |||||  |||||| ||   |||||||||||| |||||||||||  |||| ||  || |||||||||  |||||||||||||| ||||  |||| ||||||    
T  5174081 ttttaaggacgatgattcacttcaaagaggagatcacatttcaaaatcactactacaagcaattgaagagtctcaaatttctgttatcattttctcaaaa 5174180  T
Q  357 aattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcg 412  Q
    || ||||| ||||| || ||||||||| |||| ||||||||||||||||| |||||    
T  5174181 aactatgcagattcacggtggtgtttggatgagttggtgaaaataatgaaatgtcg 5174236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 157 - 404
Target Start/End: Complemental strand, 5693189 - 5692942
Alignment:
Q  157 taaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggt 256  Q
    |||||| | |||||||||||||||||||| ||||| |||| || ||||||||  ||  ||||||||| |||||| |||||| ||| |||||| ||   ||    
T  5693189 taaggagcaatgacgtgttcttaagttttcgaggggaagacacccgtgcttcaatcgtttcacatctatatgcttctcttctaaatgctggagttttcgt 5693090  T
Q  257 ttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaa 356  Q
    |||||| |||||| ||   |||| ||||||| |||||||| || ||||| ||  || |||||| ||  |||||  ||||||| |||| ||||| ||||||    
T  5693089 ttttatggacgatgattcacttccaagaggagatcacattgcaacatcactactacaagcaatcgaagagtctataatttctgttatagttttctcaaaa 5692990  T
Q  357 aattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatg 404  Q
    || ||||| ||||||   |||||||||||||| ||||| |||||||||    
T  5692989 aactatgcagattcgtcgtggtgtttgaatgagttggttaaaataatg 5692942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 158 - 447
Target Start/End: Complemental strand, 5070682 - 5070393
Alignment:
Q  158 aaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtt 257  Q
    |||||||||||| |||||||||||||| |||||  | || |||||  |||| |||||||||||||| |||||| |||||| |||  ||||||| || |||    
T  5070682 aaggatccatgatgtgttcttaagtttcagaggagaggacactcgctcttcattcacttcacatctctatgcttctcttcgaaactctggaatcaaagtt 5070583  T
Q  258 tttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaa 357  Q
    ||||  || ||  ||   |||||||||||| ||||||||||| ||||| |   |||||||||||| ||||||| ||| ||||| ||  |||| || | ||    
T  5070582 tttagggaagacgattctcttcaaagaggagatcacatttcaacatcactcctacgagcaattgaacagtctcgaatgtctatcatcattttctcgacaa 5070483  T
Q  358 attatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttct 447  Q
    ||||||| || || ||||||||| |  |||| |||||||| |||||| | |||  || || ||| |||||| | ||| ||||||||||||    
T  5070482 attatgcggaatcacgatggtgtcttgatgagttggtgaagataatggaatgtaatagaaccattggacaaattgttctgccagtgttct 5070393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 166 - 383
Target Start/End: Complemental strand, 5137857 - 5137640
Alignment:
Q  166 atgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttataga 265  Q
    |||| |||||| | |||||| ||||| |||| |||||| | |||||||||||||||||  |  |  |||||||||||||||||||||| || || || ||    
T  5137857 atgaagtgttcctgagttttcgaggggaagacactcgttcatccttcacttcacatcttcactcatctcttcaaaaggctggaattaaagtcttcatgga 5137758  T
Q  266 cgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgct 365  Q
    |||| ||   |||||||||||| ||||||||||| ||||| |||  | | ||||||| |  |||||||||||| |||||||||| || |  |||||||||    
T  5137757 cgatgattcacttcaaagaggagatcacatttcaacatcactattgcaatcaattgaccgatctcaaatttctcttattgttttctccactaattatgct 5137658  T
Q  366 gattcgcgatggtgtttg 383  Q
    |  || ||||||||||||    
T  5137657 ggatcccgatggtgtttg 5137640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 380
Target Start/End: Original strand, 5366347 - 5366567
Alignment:
Q  160 ggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttt 259  Q
    |||| ||||| |||||| |||||||||| || || || || ||||| || |||||||| ||||| |||||| |||||||||| || ||| ||   |||||    
T  5366347 ggatgcatgatgtgttcctaagttttagtggaaaggagacgcgtgcatctttcacttcgcatctctatgcttctcttcaaaacgccggatttcgtgtttt 5366446  T
Q  260 tatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaat 359  Q
     |  |||||  ||  ||||||||||||| ||||||||||| ||||| | |  ||||||||||| ||| ||| ||||||||| || |||||||||||||||    
T  5366447 cagggacgacgattcgcttcaaagaggagatcacatttcaacatcactcttgcgagcaattgaacagactcgaatttctatcatcgttttttcaaaaaat 5366546  T
Q  360 tatgctgattcgcgatggtgt 380  Q
    || ||  | ||||||||||||    
T  5366547 tacgcccaatcgcgatggtgt 5366567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 166 - 405
Target Start/End: Original strand, 5380214 - 5380453
Alignment:
Q  166 atgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttataga 265  Q
    |||| ||||| ||||||||||||||  ||||||||||  ||||||||| ||||||||| ||| || | |||| |||  | || ||||  ||||| || ||    
T  5380214 atgaagtgtttttaagttttagaggtgaagatactcgctcttccttcatttcacatctttatacttcacttcgaaacaccgggattacagttttcatgga 5380313  T
Q  266 cgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgct 365  Q
     ||  ||   |||||||||||| |||| |||||| |||  ||| | | || |||||| || ||| |||||||||||||||||||||||| |||||||||     
T  5380314 tgaagattcacttcaaagaggagatcatatttcaacattgttaccgcaagaaattgaacattctaaaatttctattattgttttttcaagaaattatgca 5380413  T
Q  366 gattcgcgatggtgtttgaatgaattggtgaaaataatga 405  Q
    ||||| ||||||||| |  |||| |||||||| |||||||    
T  5380414 gattcacgatggtgtcttgatgagttggtgaagataatga 5380453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 458
Target Start/End: Complemental strand, 5358399 - 5358099
Alignment:
Q  158 aaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtt 257  Q
    |||||||||||| |||||||| ||||| |||||  | || |||| ||||| ||||||||||||||| |||||| | ||||||||    ||||| || |||    
T  5358399 aaggatccatgatgtgttcttgagtttcagaggagaggacactcatgcttgcttcacttcacatctctatgcttcccttcaaaatctcggaatcaacgtt 5358300  T
Q  258 tttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaa 357  Q
    ||||  || ||| ||   |||||||| ||| |||||||||||  |||| ||   | ||||||| |  | |||||||||||| |||| ||||| |||| ||    
T  5358299 tttaaggatgatcattcacttcaaaggggagatcacatttcaaaatcactaatgcaagcaattcaagattctcaaatttctgttatcgttttctcaacaa 5358200  T
Q  358 attatgctgattcgcgatggtgt-ttgaatgaattggtgaaaataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtag 456  Q
    ||||||| || |||| ||||||| ||||| || |||||| | |||||||| ||||| | ||    ||| ||||| ||| |||||||||||||| ||||||    
T  5358199 attatgcagaatcgcaatggtgtcttgaa-gagttggtggagataatgaagtgtcgcagaattcaaggccaagttgttttgccagtgttctacggtgtag 5358101  T
Q  457 at 458  Q
    ||    
T  5358100 at 5358099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 363
Target Start/End: Original strand, 5272857 - 5273054
Alignment:
Q  166 atgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttataga 265  Q
    |||| |||||||||||||| |||||  | || || ||  |||| |||||||||||||| || ||| ||||||||||   ||||||||| |||||||  ||    
T  5272857 atgaagtgttcttaagtttcagaggcgaggacacgcgcacttcattcacttcacatctatacgcttctcttcaaaacaatggaattaacgtttttaagga 5272956  T
Q  266 cgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatg 363  Q
    | || ||   |||||||||||| |||||||||||  |||| ||  || |||||||||   ||||||||||||| ||||  |||| |||||||| ||||    
T  5272957 caatgatttacttcaaagaggagatcacatttcaaaatcactactactagcaattgaaaggtctcaaatttctgttatcattttctcaaaaaactatg 5273054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 5139806 - 5139719
Alignment:
Q  166 atgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaa 253  Q
    |||| |||||| |||||||| |||||||||| |||||| | |||||||||||||||||    ||| |||||||||| | |||||||||    
T  5139806 atgaagtgttcctaagtttttgagggaaagacactcgttcatccttcacttcacatcttcccgcttctcttcaaaatgttggaattaa 5139719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 404
Target Start/End: Complemental strand, 5077193 - 5077102
Alignment:
Q  313 gagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatg 404  Q
    ||||||||||  |||||  ||||  |||||| |||||||||| ||||||||| |  ||||||||||||||||  || |||| ||||||||||    
T  5077193 gagcaattgaagagtctagaattgttattatagttttttcaagaaattatgcgggatcgcgatggtgtttgatagagttggagaaaataatg 5077102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0864 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0864
Description:

Target: scaffold0864; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 156 - 450
Target Start/End: Original strand, 4254 - 4548
Alignment:
Q  156 gtaaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaagg 255  Q
    |||||||| ||||| |||||||||||||| || ||    ||||||||| || |||||  ||||||||| ||| | ||||||| ||| |||| |||||| |    
T  4254 gtaaggattcatgatgtgttcttaagtttcaggggagtggatactcgttctaccttcgtttcacatctatatacagctcttcgaaatgctgaaattaaag 4353  T
Q  256 tttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaa 355  Q
    |||||  |||||||| || ||||||||||||| || |||||||| ||||||||| ||| ||||||||  |||||||||||||| | |||||||| |||||    
T  4354 tttttcaagacgatagtgggcttcaaagaggagattacatttcaacatcattattacgtgcaattgaagagtctcaaatttctttaattgttttctcaaa 4453  T
Q  356 aaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctacc 450  Q
    ||| |||||  ||||   |||||||||| |||||||||  ||||||||||  |||  || || ||||||||||  ||||||||| ||||| ||||    
T  4454 aaactatgccaattcaaaatggtgtttggatgaattggataaaataatgatgtgttatagaaccataggacaaaaggttgtgcctgtgttttacc 4548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 156 - 450
Target Start/End: Complemental strand, 22589377 - 22589083
Alignment:
Q  156 gtaaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaagg 255  Q
    |||||||| ||||| |||||||||||||| || ||    ||||||||| || | |||  ||||||||| ||| | ||||||| ||| |||| |||||| |    
T  22589377 gtaaggattcatgatgtgttcttaagtttcaggggagtggatactcgttctacgttcgtttcacatctatatacagctcttcgaaatgctgtaattaaag 22589278  T
Q  256 tttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaa 355  Q
    |||||  |||||||| || ||||||||||||| || |||||||| |||||||||  || ||||||||  |||||||||||||| | |||||||| |||||    
T  22589277 tttttcaagacgatagtgggcttcaaagaggagattacatttcaacatcattattccgtgcaattgaagagtctcaaatttctttaattgttttctcaaa 22589178  T
Q  356 aaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctacc 450  Q
    ||| |||||  ||||   |||||||||| |||||||||  ||||||||||| |||   | || ||||||||||  ||||||| | ||||||||||    
T  22589177 aaactatgccaattcaaaatggtgtttggatgaattggaaaaaataatgaagtgttacagaaccataggacaaaaggttgtgtctgtgttctacc 22589083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 280
Target Start/End: Complemental strand, 34720028 - 34719906
Alignment:
Q  158 aaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtt 257  Q
    ||||||| |||| |||||||| ||||| |||||| |||||||||||||    |||| ||||||||| ||| |  |||||||||| ||| ||||||| |||    
T  34720028 aaggatctatgatgtgttcttgagtttcagaggggaagatactcgtgcaagattcatttcacatctctatacctctcttcaaaatgctagaattaatgtt 34719929  T
Q  258 tttatagacgataatgagcttca 280  Q
    |||| ||||||||||||| ||||    
T  34719928 tttagagacgataatgagattca 34719906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 281
Target Start/End: Complemental strand, 34715257 - 34715142
Alignment:
Q  166 atgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttataga 265  Q
    |||| |||||||| ||||| ||||||||||||||||| |     || ||||||||||| ||| |  |||||||||| ||||||||| | ||||||| |||    
T  34715257 atgatgtgttcttgagtttcagagggaaagatactcgcgaaagattgacttcacatctctatacctctcttcaaaatgctggaatttatgtttttagaga 34715158  T
Q  266 cgataatgagcttcaa 281  Q
    |||||||||| |||||    
T  34715157 cgataatgagattcaa 34715142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 380
Target Start/End: Complemental strand, 34729877 - 34729707
Alignment:
Q  210 ttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattat 309  Q
    |||| ||||||||| ||| | |||||| |||| ||||||||| | ||||||| ||| ||| ||||| ||||| ||||  |||| || ||| | ||||| |    
T  34729877 ttcatttcacatctctatacagctcttgaaaatgctggaatttatgtttttagagatgatgatgagattcaacgaggtgatcagatctcagcgtcattgt 34729778  T
Q  310 cacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgt 380  Q
      | |||||||||||||||| ||||||||||  ||||||| || | ||  |||||||||||  ||||||||    
T  34729777 tgcaagcaattgagcagtctaaaatttctatcgttgttttgtctagaagctatgctgattcaagatggtgt 34729707  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 157 - 458
Target Start/End: Complemental strand, 48016388 - 48016088
Alignment:
Q  157 taaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggt 256  Q
    |||||||  |||| |||||| |||||||| |||| ||||| || ||||||||||| ||||| ||||| |||||| ||||||||||  |||||||||| ||    
T  48016388 taaggattaatgaagtgttcctaagttttcgaggcaaagacacacgtgcttcctttacttcgcatctctatgcttctcttcaaaactctggaattaacgt 48016289  T
Q  257 ttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaa 356  Q
    || ||  |||||| | | ||||| ||  ||| ||  |||| |  ||||||||  |||| ||| | |  ||||||||||||||||||||||||| |||||     
T  48016288 ttatagggacgatcacgcgcttccaaagggagatggcattccgacatcattaaaacgaacaa-tcaaaagtctcaaatttctattattgttttctcaaag 48016190  T
Q  357 aattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtag 456  Q
    || ||||  || ||  | |||||| || |||| ||| || |||| ||| | ||||  |||| |||||| ||||||||| |||| ||||| |||  |||||    
T  48016189 aactatgtggaatcaagttggtgtatggatgagttgctggaaatcatggagtgtcacaaaaccataggccaagtggttctgccggtgttttacaatgtag 48016090  T
Q  457 at 458  Q
    ||    
T  48016089 at 48016088  T

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Target: scaffold0294 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 287
Target Start/End: Complemental strand, 6700 - 6584
Alignment:
Q  171 gtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgata 270  Q
    ||||||||||||||||||||||| |||||||  | ||| |||||||||||||| |||||| | |||||||| |||||||| |   ||||||| ||| |      
T  6700 gtgttcttaagttttagagggaacgatactcacgtttcattcacttcacatctctatgcttcacttcaaaacgctggaataaccatttttatggacaact 6601  T
Q  271 atgagcttcaaagagga 287  Q
    || ||||||||||||||    
T  6600 attagcttcaaagagga 6584  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 25566888 - 25566983
Alignment:
Q  166 atgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggttttta 261  Q
    |||| ||||||||||||| ||||||| | || ||||||||||| |||||  |||||||  ||||| |||||| ||| |||||||| || |||||||    
T  25566888 atgaagtgttcttaagttatagaggggaggacactcgtgcttctttcaccgcacatctcaatgcttctcttctaaatgctggaatcaacgttttta 25566983  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 411
Target Start/End: Original strand, 25567065 - 25567133
Alignment:
Q  343 ttgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtc 411  Q
    |||||||||||||  |||| || |||||   ||||||||||||||| |||||||| |||||||| ||||    
T  25567065 ttgttttttcaaagcattacgcggattcaaaatggtgtttgaatgagttggtgaagataatgaagtgtc 25567133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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