View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_high_20 (Length: 461)
Name: NF15254_high_20
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 236 - 446
Target Start/End: Complemental strand, 15455604 - 15455394
Alignment:
| Q |
236 |
aaactaaaatggaaaaacaaaacaaacaacaatggagacccgaccaagaagcacctcgtgacccaatggaattcttgtcacgttcatggtctgcctctgc |
335 |
Q |
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| T |
15455604 |
aaactaaaatggaaaaacaaaacaaacaacaatggagacccgacccagaagcacctcgtgacccaatggaattcttgtcacgttcatggtctgcctctgc |
15455505 |
T |
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| Q |
336 |
catggaagtctccaaagctttgtctccagctcaactccctcctctttcaaacaaactcaataatggctcttcaaatgctgctgctatacttgaagatttt |
435 |
Q |
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| T |
15455504 |
catggaagtctccaaagctttgtctccagctcaactccctcctctttcaaacaaactcaataatggctcttcaaatgctgctgctatacttgaagatttt |
15455405 |
T |
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| Q |
436 |
gctggtgaagt |
446 |
Q |
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| T |
15455404 |
gctggtgaagt |
15455394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 15455818 - 15455636
Alignment:
| Q |
22 |
tccaacttttaagatattattcttgttagtagtgcaaactttacaaaggttgtttgcaagtaacaaacactggccgtagatgaacccataaaagaaatca |
121 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15455818 |
tccaacttttaagatattattcttgttagtagtacaaactttacaaaggttgtttgcaagtaacaaacactggccgtagatgaacccataaaagaaatca |
15455719 |
T |
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| Q |
122 |
acggtgtgaatcaaacccatctcaattcacccctcactcttccttttcctattaaaaaccacaataaaaccaaaccaaactac |
204 |
Q |
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| T |
15455718 |
acggtgtgaatcaaacccatctcaattcacccctcactcttccttttcctattaaaaaccacaataaaaccaaaccaaactac |
15455636 |
T |
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