View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_high_21 (Length: 451)
Name: NF15254_high_21
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 10 - 434
Target Start/End: Original strand, 4901541 - 4901965
Alignment:
| Q |
10 |
attatactttaggatagaattcatagtactttaggatagaatcatagaatagatagggacatattataatcaaaatccttacatacatgtgcaaatatct |
109 |
Q |
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| T |
4901541 |
attatactttaggatagaattcatagtactctaggatagaatcatagaatagatagggacatattataatcaaaatccttacatacatgtgcaaatatct |
4901640 |
T |
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| Q |
110 |
caattcacgacaaatgcacaatgcttttccataatacacttaatttgtacatgttgattttannnnnnnaaatgttagagtatctaatgaatggatggat |
209 |
Q |
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| T |
4901641 |
caattcacgacaaatgcacaatgcttttccataatacacttaatttgtacatgttgattttatttttttaaatgttagagtatctaatgaatgaatggat |
4901740 |
T |
|
| Q |
210 |
aaaatgaataaggacacttttatacattatattatatgtatgtatttcctaaaacgtatttctttattatgggaggaaaacagaaaattctttagggaga |
309 |
Q |
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| T |
4901741 |
aaaatgaataaggacacttttatacattatattatatgtatgtatttcctaaaacgtgtttctttattatgggaggaaaacagaaaattctttagagaga |
4901840 |
T |
|
| Q |
310 |
ataaaaaggaaccttcataaattggttgcaatgaattggaaatggaataaatcatatttgtgcttaattatgtatatgattcaacgaatcaatggaaaca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
4901841 |
ataaaaaggaaccttcataaattggttgcaatgaattggaaatggaataaatcatatttgtgcttaattatgtatatgattcaacgaatcaatgtaagca |
4901940 |
T |
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| Q |
410 |
cacgtaacaattttatagtcaaatg |
434 |
Q |
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| T |
4901941 |
cacttaacaatttcatagtcaaatg |
4901965 |
T |
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