View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_high_22 (Length: 448)

Name: NF15254_high_22
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_high_22
NF15254_high_22
[»] chr1 (6 HSPs)
chr1 (18-448)||(47627140-47627570)
chr1 (274-428)||(47584262-47584416)
chr1 (292-428)||(47574562-47574698)
chr1 (286-408)||(47593025-47593147)
chr1 (233-323)||(47698431-47698521)
chr1 (379-436)||(6525231-6525288)
[»] chr5 (3 HSPs)
chr5 (343-428)||(28829061-28829146)
chr5 (289-428)||(28854668-28854807)
chr5 (289-428)||(28860026-28860165)
[»] chr6 (2 HSPs)
chr6 (222-441)||(21968189-21968408)
chr6 (298-416)||(22086149-22086267)
[»] chr2 (1 HSPs)
chr2 (289-349)||(2662479-2662539)


Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 47627570 - 47627140
Alignment:
Q  18 ctactgtagttgcagaggatcaaaactcaaatttaagaatgccaatagaatactcgaaaaagttaaaaggaatgacaagttttttcttctaaatatattg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47627570 ctactgtagttgcagaggatcaaaactcaaatttaagaatgccaatagaatactcaaaaaagttaaaaggaatgacaagttttttcttctaaatatattg 47627471  T
Q  118 caaaataataaataattgattaagataaataacacttcatatttgattttgttcnnnnnnnnnncttcatatttgatacaaatattagaatggtaaagat 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||| |    
T  47627470 caaaataataaataaatgattaagataaataacacttcatatttgattttgttcaaaaaaaaaacttcatatttgatacaaatattagaatggtaaaggt 47627371  T
Q  218 aatgatttgaaactcactatgtgcccacaactctatttgtatgtccttgaacttgttctatagctaccatccttgccatgccaaaatcagagatttttgg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47627370 aatgatttgaaactcactatgtgcccacaactctatttgtatgtccttgaacttgttctatagctaccatccttgccatgccaaaatcagagatttttgg 47627271  T
Q  318 attcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatcttcatgaaggtaaagaattcctcgagcaatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47627270 attcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatcttcatgaaggtaaagaattcctcgagcaatc 47627171  T
Q  418 cctttaatgatattataccgttcaggccaag 448  Q
    |||||||||||||||||||||||||||||||    
T  47627170 cctttaatgatattataccgttcaggccaag 47627140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 428
Target Start/End: Complemental strand, 47584416 - 47584262
Alignment:
Q  274 tctatagctaccatccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatct 373  Q
    ||||||| ||| || || |||||||||||||| || |||||||| ||||| ||  ||||||  |  |||||||| ||||||| |||||| ||||| || |    
T  47584416 tctatagatacaattctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattt 47584317  T
Q  374 tgagacgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgat 428  Q
    |||| |||||||||||||| |||||||||||||| || ||||| ||||| |||||    
T  47584316 tgaggcgagaatcttcatggaggtaaagaattccacgggcaattcctttgatgat 47584262  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 428
Target Start/End: Complemental strand, 47574698 - 47574562
Alignment:
Q  292 gccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatcttcat 391  Q
    |||||||||||||| || |||||||||||||||||   |||||  || |||| ||| ||||| | |||||| ||||| || ||||| |||||||||||||    
T  47574698 gccatgccaaaatctgatatttttggattcatattaccatctaacaggacatcgctaggtttcagatcacgatgtatgattttgaggcgagaatcttcat 47574599  T
Q  392 gaaggtaaagaattcctcgagcaatccctttaatgat 428  Q
    | || ||||||||||| || ||||  ||||| |||||    
T  47574598 ggagataaagaattccacgggcaactcctttgatgat 47574562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 286 - 408
Target Start/End: Complemental strand, 47593147 - 47593025
Alignment:
Q  286 atccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaat 385  Q
    ||||| ||||| |||||||| || ||||| ||||||||||| | ||| || |||||||| || ||||| | ||| || |||||||  |||||||||||||    
T  47593147 atcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaat 47593048  T
Q  386 cttcatgaaggtaaagaattcct 408  Q
     |||||| |  ||||||||||||    
T  47593047 attcatgcaaataaagaattcct 47593025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 47698521 - 47698431
Alignment:
Q  233 actatgtgcccacaactctatttgtatgtccttgaacttgttctatagctaccatccttgccatgccaaaatcagagatttttggattcat 323  Q
    ||||||| || |||| ||||||||||  |||| || |||| |||| ||| ||||| ||||||||||| |||||||| ||||| ||||||||    
T  47698521 actatgttccaacaattctatttgtacttcctcgatcttgatctagagccaccattcttgccatgccgaaatcagatattttaggattcat 47698431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 6525288 - 6525231
Alignment:
Q  379 cgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgatattatacc 436  Q
    |||||||| ||||||||||||||||||||||||||| | |||  |||||| |||||||    
T  6525288 cgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatgattttatacc 6525231  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 428
Target Start/End: Original strand, 28829061 - 28829146
Alignment:
Q  343 ttgcttggtttaatatcacggtgtataatcttgagacgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgat 428  Q
    ||||||| ||||| |||||||||||||||    || ||||||||||||||||| |||||||  ||||||| ||| |||| ||||||    
T  28829061 ttgcttgctttaagatcacggtgtataatgcgtagtcgagaatcttcatgaagataaagaacacctcgagtaataccttgaatgat 28829146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 428
Target Start/End: Original strand, 28854668 - 28854807
Alignment:
Q  289 cttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatctt 388  Q
    ||||||||||| ||||| || || || | |||||| || | |||||  |||| ||||| || ||| | |||||||||||||||    || |||||||| |    
T  28854668 cttgccatgccgaaatctgatatcttagcattcatgttttcatctaagagaatattgcctgctttgagatcacggtgtataatgcgtagtcgagaatcct 28854767  T
Q  389 catgaaggtaaagaattcctcgagcaatccctttaatgat 428  Q
    ||||||| || ||||  ||||||||||| |||||||||||    
T  28854768 catgaagatagagaacacctcgagcaatacctttaatgat 28854807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 428
Target Start/End: Original strand, 28860026 - 28860165
Alignment:
Q  289 cttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatctt 388  Q
    ||||||||||||||||| || || || | |||||| |  |  ||||| ||||  ||||||| ||| | ||| |||||||||||    || |||||||| |    
T  28860026 cttgccatgccaaaatctgaaatcttagcattcatgtcttcgtctaggagaatgttgcttgctttgagatcgcggtgtataatacgcagtcgagaatcct 28860125  T
Q  389 catgaaggtaaagaattcctcgagcaatccctttaatgat 428  Q
    |||||||||||||||  ||||||||||| |||| ||||||    
T  28860126 catgaaggtaaagaacgcctcgagcaataccttgaatgat 28860165  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 441
Target Start/End: Original strand, 21968189 - 21968408
Alignment:
Q  222 atttgaaactcactatgtgcccacaactctatttgtatgtccttgaacttgttctatagctaccatccttgccatgccaaaatcagagatttttggattc 321  Q
    |||||||||| ||||||| || |||| ||||||||||  |||||   ||||   |||  | ||||||| |||||  |||||||| || ||||| ||| ||    
T  21968189 atttgaaacttactatgttccaacaattctatttgtacttccttcctcttgacttatttcgaccatccgtgccaaaccaaaatctgaaattttaggaatc 21968288  T
Q  322 atattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatcttcatgaaggtaaagaattcctcgagcaatccctt 421  Q
    ||||| | |||||  |||| ||| || ||||| | ||| || |||||||  ||||| |||||||  ||||| |  |||||||||||||||||||| |||     
T  21968289 atattttcatctaatagaatattactaggtttgagatcgcgatgtataactttgagtcgagaatgctcatgcaaataaagaattcctcgagcaattcctc 21968388  T
Q  422 taatgatattataccgttca 441  Q
     |||||| ||| | ||||||    
T  21968389 caatgatgttaaagcgttca 21968408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 416
Target Start/End: Original strand, 22086149 - 22086267
Alignment:
Q  298 ccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatcttcatgaaggt 397  Q
    |||||||| || ||| | ||| ||||||| | |||||  |||| ||| |||||||| | |||||| |||||||  ||||| ||||||| |||||| |  |    
T  22086149 ccaaaatctgaaattctaggaatcatattttcatctaatagaatattacttggtttgagatcacgatgtataactttgagtcgagaatgttcatgcaaat 22086248  T
Q  398 aaagaattcctcgagcaat 416  Q
    |||||||||||| ||||||    
T  22086249 aaagaattcctccagcaat 22086267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 349
Target Start/End: Original strand, 2662479 - 2662539
Alignment:
Q  289 cttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttg 349  Q
    |||||||| ||||| ||||| |||||||||||||| | |  ||||| ||||||||||||||    
T  2662479 cttgccattccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttg 2662539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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