View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_high_27 (Length: 405)
Name: NF15254_high_27
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Original strand, 3446016 - 3446389
Alignment:
| Q |
20 |
aagaatatctatagtttcccatgatgtcaaatcaatttgatgcttcaaaacataatttgttcacccacctaccaatacaatgacatgaacagtgcttttg |
119 |
Q |
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| T |
3446016 |
aagaatatctatagtttcccatgatgtcaaatcaatttgatgcttcaaaacatattttgttcacccacctaccaatacaatgacatgaacagtgcttttg |
3446115 |
T |
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| Q |
120 |
tatattctgggtatggttgggaacaaacataactgcataataagttacaaaattgacatatcaacttatctacatatgaagcttgtgggtgccactggat |
219 |
Q |
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| T |
3446116 |
tatattctgggtatggttgggaacaaacataactgcataataagttacaaaattgacatatcaacttatctacatatgaagcttgtgggtgccactggat |
3446215 |
T |
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| Q |
220 |
catgtatagccatatgtttgaatcatttgatgtcaatgttctgtcgtgtaaaaatataaccaagaaaattgtcgaaaattttggatattgcaaccacata |
319 |
Q |
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| T |
3446216 |
catgtatagccatatgtttgaatcatttgatgtcaatgttctgtcgtgtaaaaataaaaccaagaaaattgtcgaaaattttggatattgcaaccacata |
3446315 |
T |
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| Q |
320 |
gatcaattctatttcannnnnnngactctatcattgttttattttgttcttacttactccatattatttcttcat |
394 |
Q |
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| T |
3446316 |
gatcaattctatttca-ttttttgattctatcattgttttattttgttcttacttactccatattatttcttcat |
3446389 |
T |
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