View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_high_28 (Length: 402)

Name: NF15254_high_28
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_high_28
NF15254_high_28
[»] chr8 (9 HSPs)
chr8 (216-391)||(30919368-30919543)
chr8 (16-71)||(30919138-30919193)
chr8 (86-141)||(30919238-30919293)
chr8 (265-365)||(35578491-35578590)
chr8 (259-362)||(1902532-1902634)
chr8 (265-362)||(30198042-30198139)
chr8 (300-342)||(11415448-11415490)
chr8 (246-348)||(30284579-30284680)
chr8 (280-364)||(11207648-11207731)
[»] chr6 (4 HSPs)
chr6 (272-365)||(30863965-30864057)
chr6 (268-330)||(3113190-3113251)
chr6 (259-356)||(14161083-14161180)
chr6 (280-364)||(18363294-18363377)
[»] chr7 (1 HSPs)
chr7 (305-364)||(42954996-42955055)
[»] chr3 (2 HSPs)
chr3 (269-356)||(15800037-15800124)
chr3 (283-357)||(7896571-7896644)
[»] chr5 (3 HSPs)
chr5 (268-322)||(39646254-39646308)
chr5 (282-353)||(13214238-13214309)
chr5 (279-323)||(38340520-38340563)
[»] chr2 (2 HSPs)
chr2 (268-313)||(12043081-12043126)
chr2 (270-322)||(10582343-10582395)
[»] chr4 (3 HSPs)
chr4 (272-336)||(9844496-9844560)
chr4 (268-328)||(28696863-28696926)
chr4 (272-364)||(43804377-43804469)
[»] chr1 (2 HSPs)
chr1 (284-327)||(45062295-45062338)
chr1 (268-312)||(49520012-49520056)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 216 - 391
Target Start/End: Original strand, 30919368 - 30919543
Alignment:
Q  216 gtggctagctacacccagtttaggtggtggtgattcataatactgaaccagaattcaagatgagattcatgtccaatatagatgcacactaaagattcgt 315  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30919368 gtggctagctacacccagtttaggtggcagtgattcataatactgaaccagaattcaagatgagattcatgtccaatatagatgcacactaaagattcgt 30919467  T
Q  316 attgattgagttcagttttgtgtcgaaccgagatacaactcgcatgtatcatatgctattggtacccttcatctca 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30919468 attgattgagttcagttttgtgtcgaaccgagatacaactcgcatgtatcatatgctattggtacccttcatctca 30919543  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 30919138 - 30919193
Alignment:
Q  16 caaaattatctgcaacggtgcaaccaattaaatgatttatatacttgtaatcccaa 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30919138 caaaattatctgcaacggtgcaaccaattaaatgatttatatacttgtaatcccaa 30919193  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 30919238 - 30919293
Alignment:
Q  86 atgtaaaaacaagtgacgtgccaaacttataagctaatatatcatctaccaatctc 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30919238 atgtaaaaacaagtgacgtgccaaacttataagctaatatatcatctaccaatctc 30919293  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 365
Target Start/End: Original strand, 35578491 - 35578590
Alignment:
Q  265 agaattcaagatgagattcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactcgcatgtat 364  Q
    |||||||||||||||| ||| ||||||  |||||  |||||| |||||| ||| |||||||||||  ||||||| ||| |||||||||| || |||||||    
T  35578491 agaattcaagatgagaatcacgtccaaagtagatatacactagagattcatatcgattgagttca-atttgtgttgaatcgagatacaattcacatgtat 35578589  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 362
Target Start/End: Complemental strand, 1902634 - 1902532
Alignment:
Q  259 tgaaccagaattcaagatgagattcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactcgc 358  Q
    |||| ||| ||||||||  ||||| |||||||| |||||| ||  |||||||||| ||| | |||||||||||||||| ||||| |  ||||||||||||    
T  1902634 tgaatcaggattcaagaatagatttatgtccaa-atagatacatgctaaagattcatatcgtttgagttcagttttgtatcgaatcaggatacaactcgc 1902536  T
Q  359 atgt 362  Q
    ||||    
T  1902535 atgt 1902532  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 362
Target Start/End: Complemental strand, 30198139 - 30198042
Alignment:
Q  265 agaattcaagatgagattcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactcgcatgt 362  Q
    ||||||||| |||||||| |||| ||| ||||||  |||||| |||||||| | ||||||||||| ||| || || ||  | ||||||||||||||||    
T  30198139 agaattcaatatgagatttatgttcaaaatagatagacactagagattcgtttcgattgagttcaatttagtatcaaattgggatacaactcgcatgt 30198042  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 11415490 - 11415448
Alignment:
Q  300 cacactaaagattcgtattgattgagttcagttttgtgtcgaa 342  Q
    ||||||||||||| || |||||||||||||||||||| |||||    
T  11415490 cacactaaagatttgtgttgattgagttcagttttgtatcgaa 11415448  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 30284579 - 30284680
Alignment:
Q  246 tgattcataatactgaaccagaattcaagatgagattcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccg 345  Q
    |||||||| ||| ||| |||| |||||||||| ||||||||||||| |||||| ||| | | | ||| |||| ||||  |||||||||||| ||||| ||    
T  30284579 tgattcatcataatgacccaggattcaagatg-gattcatgtccaaaatagatacacgccagaaattagtatggattaggttcagttttgtatcgaatcg 30284677  T
Q  346 aga 348  Q
    |||    
T  30284678 aga 30284680  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 11207648 - 11207731
Alignment:
Q  280 attcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactcgcatgtat 364  Q
    |||||||| ||| ||||||  |||||   |||| ||||||||||||||| ||||||| | ||| |||||||||||| ||||||||    
T  11207648 attcatgtacaaaatagatatacacttgggatttgtattgattgagttc-gttttgtattgaatcgagatacaacttgcatgtat 11207731  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 365
Target Start/End: Original strand, 30863965 - 30864057
Alignment:
Q  272 aagatgagattcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactcgcatgtatc 365  Q
    |||||||||||||||||||| |||||| ||||||| ||||| |||| ||||||||||| ||| || | ||| |||||||| |||| ||||||||    
T  30863965 aagatgagattcatgtccaa-atagatacacactagagatttgtatcgattgagttcattttagtattgaatcgagatacgactcacatgtatc 30864057  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 330
Target Start/End: Complemental strand, 3113251 - 3113190
Alignment:
Q  268 attcaagatgagattcatgtccaatatagatgcacactaaagattcgtattgattgagttcag 330  Q
    |||||||||||||||||||||||| |||||||||||||| || ||| ||| ||||| ||||||    
T  3113251 attcaagatgagattcatgtccaa-atagatgcacactagaggttcatatcgattgggttcag 3113190  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 356
Target Start/End: Complemental strand, 14161180 - 14161083
Alignment:
Q  259 tgaaccagaattcaagatgagattcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactc 356  Q
    |||| ||| |||||||| ||||||||| ||||| |||||| |||||||  ||||| ||| || || |||||||||||| ||||| | |||||| ||||    
T  14161180 tgaaacaggattcaagacgagattcatttccaaaatagattcacactagggattcatatcgagtgggttcagttttgtatcgaatcaagatacgactc 14161083  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 18363294 - 18363377
Alignment:
Q  280 attcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactcgcatgtat 364  Q
    |||||||||||| |||||| | |||| ||||||||||| ||||| ||||| ||| || || || |||||||| ||| ||||||||    
T  18363294 attcatgtccaa-atagatacgcacttaagattcgtatcgattgggttcaatttagtatcaaaacgagatacgactagcatgtat 18363377  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 364
Target Start/End: Complemental strand, 42955055 - 42954996
Alignment:
Q  305 taaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactcgcatgtat 364  Q
    ||||||||||||||||||| ||| |||||||| ||||| ||| ||||||||| |||||||    
T  42955055 taaagattcgtattgattgggtttagttttgtatcgaatcgaaatacaactcacatgtat 42954996  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 15800124 - 15800037
Alignment:
Q  269 ttcaagatgagattcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactc 356  Q
    ||||| ||||||||||||||||| |||||| |||| ||  ||||||||| ||||| ||||| |||||| | ||||| |||||| ||||    
T  15800124 ttcaatatgagattcatgtccaaaatagatacacattagggattcgtatcgattgggttcaattttgtattgaacccagatacgactc 15800037  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 7896571 - 7896644
Alignment:
Q  283 catgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactcg 357  Q
    ||||||||| ||| || ||||| | |||||| ||| ||||||||||| |||||| ||||||||||||||||||||    
T  7896571 catgtccaaaataaatacacaccagagattcatat-gattgagttcaattttgtatcgaaccgagatacaactcg 7896644  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 39646308 - 39646254
Alignment:
Q  268 attcaagatgagattcatgtccaatatagatgcacactaaagattcgtattgatt 322  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||| ||| ||||    
T  39646308 attcaagatgagattcatgttcaatatagatacacactaaaaattcatatggatt 39646254  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 353
Target Start/End: Original strand, 13214238 - 13214309
Alignment:
Q  282 tcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaa 353  Q
    |||||||||| |||||| ||| ||| ||||| |||||||||| |||||||||||| || || | ||||||||    
T  13214238 tcatgtccaaaatagatacacgctagagatttgtattgattgtgttcagttttgtatctaatcaagatacaa 13214309  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 38340520 - 38340563
Alignment:
Q  279 gattcatgtccaatatagatgcacactaaagattcgtattgattg 323  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||||    
T  38340520 gattcatgtccaa-atagatacacactagagattcgtattgattg 38340563  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 12043126 - 12043081
Alignment:
Q  268 attcaagatgagattcatgtccaatatagatgcacactaaagattc 313  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||||    
T  12043126 attcaatatgagattcatgtccaatatagatacacactagagattc 12043081  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 10582343 - 10582395
Alignment:
Q  270 tcaagatgagattcatgtccaatatagatgcacactaaagattcgtattgatt 322  Q
    |||||||||||||||||| ||| |||||| ||||||| |||||| ||| ||||    
T  10582343 tcaagatgagattcatgttcaaaatagatacacactagagattcatatcgatt 10582395  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 9844496 - 9844560
Alignment:
Q  272 aagatgagattcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgt 336  Q
    |||||| ||||||||||||| ||||||||||| ||   ||| |||| ||||||||||||||||||    
T  9844496 aagatgggattcatgtccaaaatagatgcacattaggaatttgtatcgattgagttcagttttgt 9844560  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 28696863 - 28696926
Alignment:
Q  268 attcaagatgagattcatgtcca---atatagatgcacactaaagattcgtattgattgagttc 328  Q
    ||||||||||| |||||||||||   | |||||| ||||||| |||||| ||||||||||||||    
T  28696863 attcaagatgaaattcatgtccatatagatagatacacactagagattcatattgattgagttc 28696926  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 364
Target Start/End: Complemental strand, 43804469 - 43804377
Alignment:
Q  272 aagatgagattcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactcgcatgtat 364  Q
    |||||||||||||||| ||| |||||| || |||| |||||| ||||  | ||||||| ||||||  || | ||||| ||||||| |||||||    
T  43804469 aagatgagattcatgttcaaaatagatacaaactagagattcatattattggagttcatttttgtaacggatcgagagacaactcacatgtat 43804377  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 45062295 - 45062338
Alignment:
Q  284 atgtccaatatagatgcacactaaagattcgtattgattgagtt 327  Q
    |||||||| |||||||||||||| |||||| |||||||||||||    
T  45062295 atgtccaaaatagatgcacactagagattcttattgattgagtt 45062338  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 49520012 - 49520056
Alignment:
Q  268 attcaagatgagattcatgtccaatatagatgcacactaaagatt 312  Q
    |||| ||||||||||||||||||| |||||| ||||||| |||||    
T  49520012 attcgagatgagattcatgtccaaaatagatacacactagagatt 49520056  T

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