View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_high_33 (Length: 386)
Name: NF15254_high_33
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 372
Target Start/End: Original strand, 5255812 - 5256173
Alignment:
| Q |
9 |
gattattctgatgtttcagtttattcccaattactttcttctctctaagacatccattttccactatcaactaaatatatgaattcaaattagtgtttat |
108 |
Q |
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| T |
5255812 |
gattattctgatgtttcagtttattcccaattactttcttctctctaagacatccattttccactatcaactaaatatatgaattcaaattagtgtttat |
5255911 |
T |
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| Q |
109 |
aatcttttccaatatcatgtaaatttttcagacaatacttattttataacacacacactaatgtactataatatcatgtgtacgtgcgtgtatgcgaggn |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5255912 |
aatcttttccaatatcatgtaaatttttcagacaatacttattttata--acacacactaatgtactataatatcatgtgtacttgcgtgtatgcgagg- |
5256008 |
T |
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| Q |
209 |
nnnnnnnncacaatcaacggagcaacaatcccttccaattcactgagaattgacttcaaaaaggtctgtgaccgcaatctgagctcgc-gcaagataatg |
307 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5256009 |
aaaaaaaacacaatcaagggagcaacaatcccttccaattcactgagaattgacttcaaaaaggtctgtgaccgcaatctgagctcgcggcaagataatg |
5256108 |
T |
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| Q |
308 |
caaaccataagatgaccttgattgaggcagcatcgactttaattaaccatgattatccacaatat |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5256109 |
caaaccataagatgaccttgattgaggcagcatcgactttaattaaccatgattatccacaatat |
5256173 |
T |
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