View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_high_36 (Length: 356)
Name: NF15254_high_36
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 21 - 346
Target Start/End: Original strand, 8280370 - 8280685
Alignment:
| Q |
21 |
caatatggtcccaacacttctccaccatattgatagctgagtccggacttaatcagggtgactagaccaacgttttagcatgtagccatatacacaactc |
120 |
Q |
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| T |
8280370 |
caatatggtcccaacacttctccaccatattgatagctgagtccggacttaatcagggtgactagaccaacgttttagcat--------agacacaactc |
8280461 |
T |
|
| Q |
121 |
tattctcctccctgaaacataagccaagagtcacaatatcttgatcaatagaagaagatatgcatccatgttacatttgaataatatgtgaagtattcgg |
220 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8280462 |
tattttcctccctgaaacataagccaagagtcacaatatcttgatcaatagaagaagat--gcatccatgttacatttgaataatatgtgaagtattcgg |
8280559 |
T |
|
| Q |
221 |
attttcgcttatattttaaaatggataaagtattttgtttgatgcttcaccaatattttatacatacagtctgtataataatgccattccggtggtataa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8280560 |
attttcgcttatattttaaaatggataaagtattttgtttgatgcttcaccaatattttatacatacagtctgtataataatgccattccggtggtataa |
8280659 |
T |
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| Q |
321 |
tttatggaattgagtgcagtcttctt |
346 |
Q |
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|||||||||||||||||||||||||| |
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| T |
8280660 |
tttatggaattgagtgcagtcttctt |
8280685 |
T |
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