View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_high_37 (Length: 354)

Name: NF15254_high_37
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_high_37
NF15254_high_37
[»] chr5 (3 HSPs)
chr5 (18-344)||(9891758-9892073)
chr5 (54-110)||(9890272-9890328)
chr5 (255-303)||(17594029-17594077)
[»] chr7 (4 HSPs)
chr7 (107-344)||(1094913-1095148)
chr7 (255-303)||(14729410-14729458)
chr7 (107-169)||(7726518-7726580)
chr7 (107-169)||(7739022-7739084)
[»] chr3 (1 HSPs)
chr3 (255-343)||(16130619-16130707)
[»] chr4 (4 HSPs)
chr4 (255-344)||(31274750-31274839)
chr4 (255-344)||(31239842-31239931)
chr4 (255-344)||(31256339-31256428)
chr4 (255-305)||(31278603-31278653)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 9892073 - 9891758
Alignment:
Q  18 aagaactcattcttgtgattttagaaatattctcacatttcaaatccatttgatcctatcattttagaaatattctcacattatggtgaatgttttggcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||| ||||||||||||||    
T  9892073 aagaactcattcttgtgattttagaaatattctcacatttcaaatccattt-------------tagaaatattctcacattatgatgaatgttttggcg 9891987  T
Q  118 acttgagacttttcacgattagagacgttaggactagtgagaagtgtaaattgcaatgattataatcattatttttggttttcttgttgtagctgtatgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891986 acttgagacttttcacgattagagacgttaggactagtgagaagtgtaaattgcaatgattataatcattatttttggttttcttgttgtagctgtatgc 9891887  T
Q  218 ttgaat--attatttaggactagtgagaagtataagtttttctttcgttactccctaccaaagatgctgcaagaacttccatattagcaaagaattggag 315  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  9891886 ttgaatacattatttaggactagtgagaagtataagtttttctttcgttactccctaccaaagatgctgtaagaacttccatattagcaaagaactggag 9891787  T
Q  316 gtacttgtgggcctacttatctgcctttg 344  Q
    |||||||||||||||||||||||||||||    
T  9891786 gtacttgtgggcctacttatctgcctttg 9891758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 9890328 - 9890272
Alignment:
Q  54 atttcaaatccatttgatcctatcattttagaaatattctcacattatggtgaatgt 110  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9890328 atttcatatctatttgatcctatcattttagaaatattctcacattatggtgaatgt 9890272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 17594029 - 17594077
Alignment:
Q  255 ttctttcgttactccctaccaaagatgctgcaagaacttccatattagc 303  Q
    ||||||| ||||||||||| |||||||||| ||||||||||||||||||    
T  17594029 ttctttctttactccctactaaagatgctgtaagaacttccatattagc 17594077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 107 - 344
Target Start/End: Original strand, 1094913 - 1095148
Alignment:
Q  107 atgttttggcgacttgagacttttcacgattagagacgttaggactagtgagaagtgtaaattgcaatgattataatcattatttttggttttcttgttg 206  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1094913 atgttttggcgacttgagacttttcacgattagcgaccttaggactagtgagaagtgtaaattgcaatgattataatcattattttttgttttcttgttg 1095012  T
Q  207 tagctgtatgcttgaatattatttaggactagtgagaagtataagtttttctttcgttactccctaccaaagatgctgcaagaacttccatattagcaaa 306  Q
    |||||||||| |||||||    ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1095013 tagctgtatgtttgaata--cattaggactagtaagaattattagtttttctttcgttactccctaccaaagatgctgtaagaacttccatattagcaaa 1095110  T
Q  307 gaattggaggtacttgtgggcctacttatctgcctttg 344  Q
    ||| |||||||||||||||||||||||||||| |||||    
T  1095111 gaactggaggtacttgtgggcctacttatctggctttg 1095148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 14729458 - 14729410
Alignment:
Q  255 ttctttcgttactccctaccaaagatgctgcaagaacttccatattagc 303  Q
    ||||||| ||||||||||| |||||||||| ||||||||||||||||||    
T  14729458 ttctttctttactccctactaaagatgctgtaagaacttccatattagc 14729410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 7726580 - 7726518
Alignment:
Q  107 atgttttggcgacttgagacttttcacgattagagacgttaggactagtgagaagtgtaaatt 169  Q
    ||||||||||||||||||||||| | ||||||||||| || ||| ||||| ||||| ||||||    
T  7726580 atgttttggcgacttgagactttactcgattagagacctttggattagtgcgaagtttaaatt 7726518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 7739084 - 7739022
Alignment:
Q  107 atgttttggcgacttgagacttttcacgattagagacgttaggactagtgagaagtgtaaatt 169  Q
    ||||||| ||||||||||||||| | ||||||||||| || ||||||||| ||||| ||||||    
T  7739084 atgtttttgcgacttgagactttgctcgattagagacctttggactagtgcgaagtttaaatt 7739022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 255 - 343
Target Start/End: Original strand, 16130619 - 16130707
Alignment:
Q  255 ttctttcgttactccctaccaaagatgctgcaagaacttccatattagcaaagaattggaggtacttgtgggcctacttatctgccttt 343  Q
    ||||||| |||||||| |||||||||| || ||||||||||||| |||||||||| |||| | |||||||| |||||||||||||||||    
T  16130619 ttctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtggaagcacttgtggacctacttatctgccttt 16130707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 344
Target Start/End: Complemental strand, 31274839 - 31274750
Alignment:
Q  255 ttctttcgttactccctaccaaagatgctgcaagaacttccatattagcaaagaattggaggtacttgtgggcctacttatctgcctttg 344  Q
    ||||||| ||||| |||| | |||||| || |||||||||| | ||||||||||| |||||||| |||||| |||||||||||| |||||    
T  31274839 ttctttctttactacctatcgaagatgttgtaagaacttccgtgttagcaaagaagtggaggtatttgtggacctacttatctgtctttg 31274750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 344
Target Start/End: Complemental strand, 31239931 - 31239842
Alignment:
Q  255 ttctttcgttactccctaccaaagatgctgcaagaacttccatattagcaaagaattggaggtacttgtgggcctacttatctgcctttg 344  Q
    ||||||| || |||||||| |||||||||| ||||||||||||||| || ||||| ||||   | |||||| ||||||||||||| ||||    
T  31239931 ttctttcattgctccctacgaaagatgctgtaagaacttccatattggctaagaagtggaaacaattgtggacctacttatctgcatttg 31239842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 344
Target Start/End: Complemental strand, 31256428 - 31256339
Alignment:
Q  255 ttctttcgttactccctaccaaagatgctgcaagaacttccatattagcaaagaattggaggtacttgtgggcctacttatctgcctttg 344  Q
    ||||||| || |||||||| |||||||||| ||||||||||||||| || ||||| ||||   | |||||| ||||||||||||| ||||    
T  31256428 ttctttcattgctccctacgaaagatgctgtaagaacttccatattggctaagaagtggaaacaattgtggacctacttatctgcatttg 31256339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 31278653 - 31278603
Alignment:
Q  255 ttctttcgttactccctaccaaagatgctgcaagaacttccatattagcaa 305  Q
    ||||||||||||||||| |||||||||| | | ||||||||||||||||||    
T  31278653 ttctttcgttactccctgccaaagatgccgtaggaacttccatattagcaa 31278603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University