View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_high_43 (Length: 315)
Name: NF15254_high_43
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 6 - 298
Target Start/End: Original strand, 4113134 - 4113423
Alignment:
| Q |
6 |
tgacatgaaaaatctttagatccaaaagttactaagtgtatcaatattttccaattttttcttcttgttcttatatgtattttccttgcacaggttgaat |
105 |
Q |
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| T |
4113134 |
tgacatgaaaaatctttagatccaaaagttactaagtgtatcaaaattttccaattttttct---tgttcttatatgtattttccttgcacaggttgaat |
4113230 |
T |
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| Q |
106 |
caattaagaagatatcagagtatgtgactcaactgagattagttggaaagggtcacggtatgtatatttcctccactaacattggtaatatgaaaatcaa |
205 |
Q |
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| T |
4113231 |
caattaagaagatatcagagtatgtgactcaactgagattagttggaaagggtcacggtatgtatatttcctccactaccattggtaatatgaaaatcaa |
4113330 |
T |
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| Q |
206 |
atgaatgaggtttaacagaacatttgtttttgttggttgtaggtgtgtggcactttgatcagactcttctccattgattaagatgatgatgtt |
298 |
Q |
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| T |
4113331 |
atgaatgaggtttaacagaacatttgtttttgttggttgtaggtgtgtggcactttgatcagactcttctccattgattaagatgatgatgtt |
4113423 |
T |
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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 25792566 - 25792490
Alignment:
| Q |
96 |
caggttgaatcaattaagaagatatcagagtatgtgactcaactgagattagttggaaagggtcacggtatgtatat |
172 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| |
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| T |
25792566 |
caggttgaatcaattaagaagatatcagagtatgtgtctcaattgagaagggttggaaagggtcatggtatgtatat |
25792490 |
T |
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