View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15254_high_45 (Length: 309)
Name: NF15254_high_45
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_45 |
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| [»] chr2 (13 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 39479135 - 39478839
Alignment:
| Q |
13 |
aatatgctgggaaaagttgaaaggaaggaagaggaactcaaggctcttactgagaaagtttctgaatttaatctggaacttaagaccaacgagcaagagc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39479135 |
aatatgctgggaaaagttgaaaggaaggaagaggaactcaaggctcttaccgagaaagtttctgaatgtaatctggaacttaagaccaacgagcaagagc |
39479036 |
T |
|
| Q |
113 |
ttgatgcaatgaaaatatcaattagcggacaagcagaaagattagagtcttaaaggaagaaggtactaaaggtaatatcagtaaggcagaatgatcgtgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
39479035 |
ttgatgcaatgaaaatatcaattagcggacaagcagaaatattagagtcttaaaggaagaaggtactaaaggtaatatcagtaaggcagaatgatcatgt |
39478936 |
T |
|
| Q |
213 |
tcaaatcagggattttgagtcaatgaagaagcgacttgaacatattttttaaatcatgttaaagctgtatggttttcacccttgaacattttatgaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39478935 |
tcaaatcagggattttgagtcaatgaagaagcgacttgaaactattttttaaatcatgttaaagctgtatggttttcacccttgaacattttatgaa |
39478839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 39398969 - 39398774
Alignment:
| Q |
13 |
aatatgctgggaaaagttgaaaggaaggaagaggaactcaaggctcttactgagaaagtttctgaatttaatctggaacttaagaccaacgagcaagagc |
112 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||| | | |||||| | |||| |||| ||||||| || |||| ||| |||||| |
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| T |
39398969 |
aatatgctggggaaacttgaaaggaaggaagaggaactcaaggctcttgcccaaaaagttgccgaatgtaatatggaactagagtccaaagagaaagagc |
39398870 |
T |
|
| Q |
113 |
ttgatgcaatgaaaatatcaattagcggacaagcagaaagattagagtcttaaaggaagaaggtactaaaggtaatatcagtaaggcagaatgatc |
208 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||| | ||||||||||||| |
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|
| T |
39398869 |
ttgatgcaatgaaaatattagttagcggacaagcagaaattttagagtcggaaaggaagaagttactaaaggtaatgtcaatcaggcagaatgatc |
39398774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 39467265 - 39467457
Alignment:
| Q |
16 |
atgctgggaaaagttgaaaggaaggaagaggaactcaaggctcttactgagaaagtttctgaatttaatctggaacttaagaccaacgagcaagagcttg |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||| | |||||| || ||| |||| |||||||| || |||| ||| ||||||||| |
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|
| T |
39467265 |
atgctgggaaaagttgaaagtaaggaagagggactcaaggctcttactcaaaaagttgctaaatgtaatatggaacttgagtccaaagagaaagagcttg |
39467364 |
T |
|
| Q |
116 |
atgcaatgaaaatatcaattagcggacaagcagaaagattagagtcttaaaggaagaaggtactaaaggtaatatcagtaaggcagaatgatc |
208 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||||| ||||||||| ||||||||||| ||||||||||||||||| | || |||||||||| |
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|
| T |
39467365 |
attcaatgaaaatactggttagcagacaagcagaaatattagagtccgaaaggaagaagttactaaaggtaatatcaatcagacagaatgatc |
39467457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 39602301 - 39602523
Alignment:
| Q |
30 |
tgaaaggaaggaagaggaactcaaggctcttactgagaaagtttctgaatttaatctggaacttaagaccaacgagcaagagcttgatgcaatgaaaata |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | ||| || ||||||||| | ||||||||||| |||| ||| |||||||||||||||||| | | |
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|
| T |
39602301 |
tgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacaga |
39602400 |
T |
|
| Q |
130 |
tcaattagcggacaagcagaaagattagagtcttaaaggaagaaggtactaaaggtaatatcagtaaggcagaatgatcgtgttcaaatcagggattttg |
229 |
Q |
| |
|
| |||| | || |||||||||| ||||||||| ||||||||||| | |||||| ||| ||||| || | |||||| ||||| |||||| | ||| || | |
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|
| T |
39602401 |
ttaattggtgggcaagcagaaaaattagagtccaaaaggaagaagttgctaaagctaacatcagaaaaggagaatggtcgtgctcaaataaaggaattcg |
39602500 |
T |
|
| Q |
230 |
agtcaatgaagaagcgacttgaa |
252 |
Q |
| |
|
||||||| ||||||| ||||||| |
|
|
| T |
39602501 |
agtcaataaagaagcaacttgaa |
39602523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 39382014 - 39381882
Alignment:
| Q |
30 |
tgaaaggaaggaagaggaactcaaggctcttactgagaaagtttctgaatttaatctggaacttaagaccaacgagcaagagcttgatgcaatgaaaata |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | || || ||||||||| | ||||||||||| |||| ||| |||||||||| ||||||| | |
|
|
| T |
39382014 |
tgaaaggaaggaagaggaactcaaggctctttcccaacaaattgctgaatttattttggaacttaaggccaaagagatagagcttgatacaatgaacaag |
39381915 |
T |
|
| Q |
130 |
tcaattagcggacaagcagaaagattagagtct |
162 |
Q |
| |
|
| |||| || |||||| |||| |||||||||| |
|
|
| T |
39381914 |
ttaattggcacacaagcggaaaaattagagtct |
39381882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 39161207 - 39161358
Alignment:
| Q |
23 |
gaaaagttgaaaggaaggaagaggaactcaaggctcttactgagaaagtttctgaatttaatctggaacttaagaccaacgagcaagagcttgatgcaat |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | ||||| | |||||| |||||| || | ||| |||||||||||| ||| |||| ||||||||| | |
|
|
| T |
39161207 |
gaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagt |
39161306 |
T |
|
| Q |
123 |
gaaaatatcaattagcggacaagcagaaagattagagtcttaaaggaagaag |
174 |
Q |
| |
|
||| | || |||||| | | || |||||| ||||||||| |||||||||| |
|
|
| T |
39161307 |
gaacaaattaattagtgaagaaacagaaatattagagtcaacaaggaagaag |
39161358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 39207987 - 39207836
Alignment:
| Q |
23 |
gaaaagttgaaaggaaggaagaggaactcaaggctcttactgagaaagtttctgaatttaatctggaacttaagaccaacgagcaagagcttgatgcaat |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | ||||| | |||||| |||||| || | ||| |||||||||||| ||| |||| ||||||||| | |
|
|
| T |
39207987 |
gaaaagttgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagt |
39207888 |
T |
|
| Q |
123 |
gaaaatatcaattagcggacaagcagaaagattagagtcttaaaggaagaag |
174 |
Q |
| |
|
||| | || |||||| | | || |||||| ||||||||| |||||||||| |
|
|
| T |
39207887 |
gaacaaattaattagtgaagaaacagaaatattagagtcaacaaggaagaag |
39207836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 39129810 - 39129911
Alignment:
| Q |
86 |
tggaacttaagaccaacgagcaagagcttgatgcaatgaaaatatcaattagcggacaagcagaaagattagagtcttaaaggaagaaggtactaaaggt |
185 |
Q |
| |
|
||||||| |||| ||| ||| |||||| |||||||||||| | || |||| | |||||||||||| | |||||||| ||||||||||| |||| ||||| |
|
|
| T |
39129810 |
tggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaattaattgacagacaagcagaaatactagagtctgaaaggaagaagttactcaaggt |
39129909 |
T |
|
| Q |
186 |
aa |
187 |
Q |
| |
|
|| |
|
|
| T |
39129910 |
aa |
39129911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 39427451 - 39427349
Alignment:
| Q |
86 |
tggaacttaagaccaacgagcaagagcttgatgcaatgaaaatatcaattagcggacaagcagaaagattagagtcttaaaggaagaaggtactaaaggt |
185 |
Q |
| |
|
||||||||||||| || ||| |||||| |||||| ||||||| | |||| || |||||||||||||||| | || ||||||||||| |||| ||||| |
|
|
| T |
39427451 |
tggaacttaagactaaagagaaagagcgtgatgcgatgaaaaaacaaattgacgaacaagcagaaagattaaaatcagaaaggaagaagttactgaaggt |
39427352 |
T |
|
| Q |
186 |
aat |
188 |
Q |
| |
|
||| |
|
|
| T |
39427351 |
aat |
39427349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 39369561 - 39369656
Alignment:
| Q |
30 |
tgaaaggaaggaagaggaactcaaggctcttactgagaaagtttctgaatttaatctggaacttaagaccaacgagcaagagcttgatgcaatgaa |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | ||| || ||||| ||| | ||||| ||| | |||| ||| ||||||||||||| |||| |
|
|
| T |
39369561 |
tgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaaattactgtggaatttatggccaaagagatagagcttgatgcagtgaa |
39369656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 39199283 - 39199253
Alignment:
| Q |
30 |
tgaaaggaaggaagaggaactcaaggctctt |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
39199283 |
tgaaaggaaggaagaggaactcaaggctctt |
39199253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 39450809 - 39450839
Alignment:
| Q |
30 |
tgaaaggaaggaagaggaactcaaggctctt |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
39450809 |
tgaaaggaaggaagaggaactcaaggctctt |
39450839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 44896137 - 44896048
Alignment:
| Q |
30 |
tgaaaggaaggaagaggaactcaaggctcttactgagaaagtttctgaatttaatctggaacttaagaccaacgagcaagagcttgatgc |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | | ||| || ||||| || | ||||||||||| |||| ||| |||| |||||||| |
|
|
| T |
44896137 |
tgaaaggaaggaagagcaactcaaggctctttcccaaaaaattgatgaatgtactatggaacttaaggccaaagagaaagaccttgatgc |
44896048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 24 - 252
Target Start/End: Original strand, 16112593 - 16112821
Alignment:
| Q |
24 |
aaaagttgaaaggaaggaagaggaactcaaggctcttactgagaaagtttctgaatttaatctggaacttaagaccaacgagcaagagcttgatgcaatg |
123 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| | |||||| | ||| |||||||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
16112593 |
aaaagttgaaagcaagaaagaggaactcaaggctcttaaccaaaaagttgcggaaggtaatctggaacttaagtccaaggagaaagagcttgatgcaatg |
16112692 |
T |
|
| Q |
124 |
aaaatatcaattagcggacaagcagaaagattagagtcttaaaggaagaaggtactaaaggtaatatcagtaaggcagaatgatcgtgttcaaatcaggg |
223 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
16112693 |
aaaatatcaattagcggacaagcggaaatattagagtccgaaaggaagcagttactaaaggtaatatcagtaatgcagaatgatcgtgctcaaatgaggg |
16112792 |
T |
|
| Q |
224 |
attttgagtcaatgaagaagcgacttgaa |
252 |
Q |
| |
|
|| |||| |||| ||| |||||||||||| |
|
|
| T |
16112793 |
atgttgattcaaagaaaaagcgacttgaa |
16112821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 16112547 - 16112589
Alignment:
| Q |
20 |
tgggaaaagttgaaaggaaggaagaggaactcaaggctcttac |
62 |
Q |
| |
|
||||||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
16112547 |
tgggaaaagctgagagcaaggaagaggaactcaaggctcttac |
16112589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 33559738 - 33559842
Alignment:
| Q |
21 |
gggaaaagttgaaaggaaggaagaggaactcaaggctcttactgagaaagtttctgaatttaatctggaacttaagaccaacgagcaagagcttgatgca |
120 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||||| | | || ||| |||||| || | |||||||| || ||| ||| |||| |||||||| |
|
|
| T |
33559738 |
gggaaaagttgaaatgacggaagaggaactcagggctctttcccaaaaggttgctgaatgtactgtggaacttcaggtcaaagagaaagatcttgatgcg |
33559837 |
T |
|
| Q |
121 |
atgaa |
125 |
Q |
| |
|
||||| |
|
|
| T |
33559838 |
atgaa |
33559842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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