View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15254_high_48 (Length: 288)
Name: NF15254_high_48
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 36679410 - 36679613
Alignment:
| Q |
14 |
cataggataatatgatgcacatagcacattaaactatcacaatgatttgaattcaagaatatctatccatgtctaaattacattgtacatcaatacagtg |
113 |
Q |
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| T |
36679410 |
cataggataatatgatgcacatagcacattaaactatcacaatgatttgaattcaagaatatctattcatgtctaaattacattgtacatcaatacagtg |
36679509 |
T |
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| Q |
114 |
tgcacaagaatatctattctagaaaataccaatcttcacaaacccaaaatttgacttccaatgttaaataactactaactaaagtgactgaagtcacatc |
213 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36679510 |
tgcacaagaatatctattctagaaaatatcaatcttcacaaacccaaaatttgacttccaatgttaaataactactaactaaagtgactgaagtcacatc |
36679609 |
T |
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| Q |
214 |
tata |
217 |
Q |
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|||| |
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| T |
36679610 |
tata |
36679613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 36679786 - 36679860
Alignment:
| Q |
214 |
tatattttaagactagaactgaaaataagagtgaatatggaaaaaagaattgatagtactaaccaggagtgtgaa |
288 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36679786 |
tatattttaagactggaactgaaaataagagtgaatatggaaaaaacaattgatagtactaaccaggagtgtgaa |
36679860 |
T |
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