View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15254_high_5 (Length: 666)
Name: NF15254_high_5
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15254_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 626; Significance: 0; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 9 - 650
Target Start/End: Original strand, 22621057 - 22621698
Alignment:
| Q |
9 |
acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621057 |
acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt |
22621156 |
T |
|
| Q |
109 |
cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621157 |
cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatatcgtatgattgtgacactgtgacccatacacgatattcgaagtg |
22621256 |
T |
|
| Q |
209 |
tcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctcttctcttcca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22621257 |
tcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagttcgctcttctcttcca |
22621356 |
T |
|
| Q |
309 |
tccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtcatgccatttcg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621357 |
tccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcagattcatcaatatataaagcagccattcgagggtcatgccatttcg |
22621456 |
T |
|
| Q |
409 |
ccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatga |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621457 |
ccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatga |
22621556 |
T |
|
| Q |
509 |
cttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatattatggagtaaagccatacacccaagattacga |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621557 |
cttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatattatggagtaaagccatacacccaagattacga |
22621656 |
T |
|
| Q |
609 |
ggatgttgtctcacatggatcatataatcatcaatgatgtct |
650 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621657 |
ggctgttgtctcacatggatcatataatcatcaatgatgtct |
22621698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 9 - 585
Target Start/End: Original strand, 22657209 - 22657785
Alignment:
| Q |
9 |
acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| ||||||| || ||||||||||| ||| |||||||||||| ||||||||||| ||| | |
|
|
| T |
22657209 |
acatcatcaaacacaaaaacatacctctttttctgcaagtattttctcagctcagaaatcaatgcgcctcgatccatttcagtgatatcttgaggaggat |
22657308 |
T |
|
| Q |
109 |
cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtg |
208 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| ||||| |||| | ||||||||||| |||||||||||||||| ||| |||||| |||| ||||| |
|
|
| T |
22657309 |
tgtctcctttttgtttgtaaagctccttcaacatgcgtctcaacaacacttctatattgtaagattgtgacactgtgatccaaacacgacattcaaagtg |
22657408 |
T |
|
| Q |
209 |
tcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctcttctcttcca |
308 |
Q |
| |
|
||| | |||||||||||||| ||||| ||||| |||||||| | ||||||||| ||||||||||| || ||||| ||||||||||||||| |||||| |
|
|
| T |
22657409 |
tccaacaacctctttgctgtcaaaaacttttttagcaagagtagtttttccttgccctcccattcccacgacagatatgacagtgcgctctgatcttccc |
22657508 |
T |
|
| Q |
309 |
tccaccaa-caatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtcatgccatttc |
407 |
Q |
| |
|
| ||||| ||||| | | ||||| ||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22657509 |
tttaccaaccaatctact-aatctttttttgggtgcttgaaagcctataatttccgcttcatcaatgtataaagcagccattcgagggtcatgccatttg |
22657607 |
T |
|
| Q |
408 |
gccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatg |
507 |
Q |
| |
|
|| ||||||||||||||||| | |||||||||| | |||||||||||||||||| ||||| |||||||||||||| ||||||||| ||| ||| |
|
|
| T |
22657608 |
gcagtttggcttcctctaaagcttgtagatccttgttgagaagaaggttggatttggaaaccatatctttcacttctttctttgatcccacaaacaaatg |
22657707 |
T |
|
| Q |
508 |
acttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatattatggagta |
585 |
Q |
| |
|
||||||| ||||||||||| |||||||| || |||||| |||||||||||| |||||| ||||| |||||||| |
|
|
| T |
22657708 |
acttaatctcttgaatcttgaacgctatttgacggcgagaattcatagttttgagcaagtgaggaatatcatggagta |
22657785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 24 - 646
Target Start/End: Original strand, 22648317 - 22648938
Alignment:
| Q |
24 |
aaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggtcgtctcctttttgtt |
123 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| || ||||||||| |||||| |||||||| |||||| ||| || ||| || ||||||||||||| |
|
|
| T |
22648317 |
aaaacatacctcttttgttgcaagtagtttctcagctcagaaatcaacgaccctc-atccattttcgagatacctttaggaggctcttctcctttttgtt |
22648415 |
T |
|
| Q |
124 |
ggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctcttt |
223 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||| ||| ||| ||||||||| ||||| ||| |||||||||| |||| ||||||||| |||||||| |
|
|
| T |
22648416 |
tgtaaagctcattcaacatgcctctcagcaacccttctgtatagtatgattgcaacactttgatccatacacgaaattcaaagtgtcccgctacctcttt |
22648515 |
T |
|
| Q |
224 |
gctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatcca |
323 |
Q |
| |
|
|||||| || || ||| |||||||||||| ||||||| | |||||||| ||||||||||||||||||||||||||| |||||| || |||||| | ||| |
|
|
| T |
22648516 |
gctgtcaaacacttttctggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctctgatcttccctctaccaaccaacca |
22648615 |
T |
|
| Q |
324 |
atcaatctatttttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctc |
423 |
Q |
| |
|
|||| | ||| | ||| |||||| |||||| ||||| |||| |||| |||||||||||| ||||||||||||||||||| | ||||||||| || |
|
|
| T |
22648616 |
atcatttgttttcttggtgcttgaaggcctaccatttctgcttcaccaatgtataaagcagccgttcgagggtcatgccatttaacattttggctttttc |
22648715 |
T |
|
| Q |
424 |
taaagtggcttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaat |
523 |
Q |
| |
|
| ||| |||||| |||||||| ||||||| ||||||||| |||| || | ||| |||||||||| ||| | | | || |||||||| ||||||| |
|
|
| T |
22648716 |
tgaagcttcttgattcttgttcattagaaggcaagatttggaactcatatctgtggcttttttccttgattccacgaataaataacttaatgtcttgaat |
22648815 |
T |
|
| Q |
524 |
cttggacgctattcgatggcgagggatcatagttttgactaagtgactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcaca |
623 |
Q |
| |
|
|| ||| || ||| |||||||| |||| ||||||| ||||| | ||| |||||||||||||| | ||| || |||| |||||| || ||| || | |
|
|
| T |
22648816 |
ctcggatgcaatttgatggcgatctttcattgttttgagtaagtaagcaatcttatggagtaaagctagacatccgagatcacgaggctgctgttccata |
22648915 |
T |
|
| Q |
624 |
tggatcatataatcatcaatgat |
646 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
22648916 |
tagatcatataatcatcaatgat |
22648938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 177 - 646
Target Start/End: Complemental strand, 22104878 - 22104415
Alignment:
| Q |
177 |
gacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattccta |
276 |
Q |
| |
|
|||||||||| ||| ||| || | || |||||||| || || || |||||||| ||||| | ||||| ||||| | ||||||||| ||||||||||||| |
|
|
| T |
22104878 |
gacactgtgatccaaacatgacaatcaaagtgtccaattacatccttgctgtcaaaaactctcttggctagagttgtttttccttgccctcccattccta |
22104779 |
T |
|
| Q |
277 |
ccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattcatcaatata |
376 |
Q |
| |
|
|||| || | |||||||||||||| |||| | |||| | | |||||||||| ||| | ||| ||| || || |||| ||| ||| ||||| || |
|
|
| T |
22104778 |
ccaccgaaactacagtgcgctcttccgttccctttaccatccaatcaatcaatctttttcttggtgctttgaatcccacaacatcagcttcctcaatgta |
22104679 |
T |
|
| Q |
377 |
taaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaagccatacctt |
476 |
Q |
| |
|
| |||||| | ||||||||| |||||||| || ||| || || |||| | ||||||||||||||||| ||||||||||| ||||||| | | |
|
|
| T |
22104678 |
aagagcagcaactcgagggtcgtgccatttggcatttcggttttctcttgaactgcttgatccttgttcaaaagaaggttgga------agccatatcgt |
22104585 |
T |
|
| Q |
477 |
tcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatat |
576 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||| ||||||| ||| | |
|
|
| T |
22104584 |
tcacttctttccttgatcccacgaacagatgacttaacatcttgaatctcagctgctattcgatggcgaggggtcatagttttgagtaagtgagcaatct |
22104485 |
T |
|
| Q |
577 |
tatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgat |
646 |
Q |
| |
|
||| |||| ||| | ||| ||| ||| |||||| || |||| |||||||||||||| ||||||||||| |
|
|
| T |
22104484 |
tatcaagtatagctacacatccaggatcacgaggctgctgtcctacatggatcatatactcatcaatgat |
22104415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 168 - 561
Target Start/End: Complemental strand, 22034681 - 22034294
Alignment:
| Q |
168 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
267 |
Q |
| |
|
|||||||| |||||||| | |||||||||||| || ||||||||||||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22034681 |
tatgattgagacactgtaatccatacacgataatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22034582 |
T |
|
| Q |
268 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
367 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| | |||| | | |||||||||| | | | ||| ||| ||| || |||| ||| ||| |
|
|
| T |
22034581 |
ccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaatcaatctttgtcttggtgcttcaaatcccacaacctcagtttc |
22034482 |
T |
|
| Q |
368 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
467 |
Q |
| |
|
|||| || | |||||| | ||||||||| |||||||| || || ||||||||| | | ||||| ||||||||||| |||| | ||||||| |
|
|
| T |
22034481 |
ctcaacgtaaagagcagcgactcgagggtcgtgccatttggcattcctacttcctctagaattgcttgttccttgttcaaaagaacg------ttggaag |
22034388 |
T |
|
| Q |
468 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttga |
561 |
Q |
| |
|
||||| |||||||||||||| |||||||| | ||||||| ||||| |||| |||| || ||||||||| | ||||||||||||||||||| |
|
|
| T |
22034387 |
ccatatctttcacttctttctgtgatcccacgaacagatgtcttaacatcttgtatctcagatgctattcgacgacgagggatcatagttttga |
22034294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 168 - 646
Target Start/End: Complemental strand, 22179581 - 22179109
Alignment:
| Q |
168 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
267 |
Q |
| |
|
|||||||| |||||||| | |||||||||| | || |||||||| |||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22179581 |
tatgattgagacactgtaatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22179482 |
T |
|
| Q |
268 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
367 |
Q |
| |
|
||||||| ||||| | | ||||||||||||| ||||| | |||| | | |||||||||| ||| | || ||| ||| || |||| ||| ||| |
|
|
| T |
22179481 |
ccattcccaccacgaataccacagtgcgctctttccttccctgtaccatccaatcaatcaatctttttcttggcgcttcaaatcccacaacctcagcttc |
22179382 |
T |
|
| Q |
368 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
467 |
Q |
| |
|
|| | || | ||||||| |||||||||| |||||||| | || |||||||||| | | ||||| |||||||||| |||| |||||| || |
|
|
| T |
22179381 |
ctcgacgtaaagagcagcctttcgagggtcgtgccatttggtattcctgcttcctctagaattgcttgtgccttgttcaaaagaacgttgga------ag |
22179288 |
T |
|
| Q |
468 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagt |
567 |
Q |
| |
|
||||| | ||||||||||||||||||| | | ||||||||||||||| ||||||||| | ||||||||||||||| || |||| ||||||| ||||| |
|
|
| T |
22179287 |
ccatatttatcacttctttccttgatcctacgaacagatgacttaatgtcttgaatctcagctgctattcgatggcgacgggtcatggttttgagtaagt |
22179188 |
T |
|
| Q |
568 |
gactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgat |
646 |
Q |
| |
|
|| |||| |||| | || ||| | ||| ||| ||| |||||| ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
22179187 |
gagtaatcttatcaaatacagctacacatccaggatcacgaggttgttgtccaacatggatcaaataatcatcaatgat |
22179109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 168 - 561
Target Start/End: Complemental strand, 22115249 - 22114862
Alignment:
| Q |
168 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
267 |
Q |
| |
|
|||||||| |||||||||| |||||||||| | || |||||||| |||| || |||||||| ||||| || || | ||||||| ||||||||| |||| |
|
|
| T |
22115249 |
tatgattgagacactgtgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttctttgatagagtggtttttccttgccctc |
22115150 |
T |
|
| Q |
268 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
367 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| | |||| | | |||||||||| | | | ||| ||| ||| || |||| ||| ||| |
|
|
| T |
22115149 |
ccattcctaccacagaaagaacagtgcgctcttcccttccctataccatccaatcaatcaatctttgtcttggtgcttcaaatcccacaacctcagcttc |
22115050 |
T |
|
| Q |
368 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
467 |
Q |
| |
|
|||| || | |||||||| ||||||||| |||||||| || || ||||||||| | | ||||| ||||||||||| |||| | ||||||| |
|
|
| T |
22115049 |
ctcaacgtaaagagcagccactcgagggtcgtgccatttggcattcctacttcctctagaattgcttgttccttgttcaaaagaacg------ttggaag |
22114956 |
T |
|
| Q |
468 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttga |
561 |
Q |
| |
|
||||| |||||||||||||| |||||||| | ||||||| ||||| |||| |||| || ||||||||| | ||||||||||||||||||| |
|
|
| T |
22114955 |
ccatatctttcacttctttctgtgatcccacgaacagatgtcttaaaatcttgtatctcagatgctattcgacgacgagggatcatagttttga |
22114862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 67 - 646
Target Start/End: Original strand, 30989506 - 30990067
Alignment:
| Q |
67 |
tcaatgaccctagatccatttcagagatatcttgagaagggtcgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatatt |
166 |
Q |
| |
|
||||||||||| ||||||||| | | ||||| | || ||| || ||| | ||||||| ||||| || |||||||| |||| |||||| || | | | |
|
|
| T |
30989506 |
tcaatgaccctcgatccatttgaaaaatatccttaggaggatcttcttcgttttgtttgtaaaactttagcaacatgtccctcaacaacccttcaacagt |
30989605 |
T |
|
| Q |
167 |
gtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcct |
266 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| | || |||||||| ||||| | || |||| ||||| || || | |||||||| ||| ||||| ||| |
|
|
| T |
30989606 |
atatgattgagacactatgatccatacacgacaatcaaagtgtccaatgacattcctgttgtcaaaaactttcttcgtaagagtggttttaccttgccct |
30989705 |
T |
|
| Q |
267 |
cccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaatt |
366 |
Q |
| |
|
||||| ||||| ||||| || || |||||||| |||||||| | |||||| | ||||||| | | | | || || | |||| |||| |||| || |
|
|
| T |
30989706 |
cccatgcctactacagaaattaccgtgcgctcatctcttccctttaccaaccaatcaatcaacatgtctctctgtgtttcatagcccacaacttcagctt |
30989805 |
T |
|
| Q |
367 |
catcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaa |
466 |
Q |
| |
|
| |||| || | ||||||| |||||| || ||||| || || || |||||||||||| | | ||||||||||||||||| |||| ||||| || |
|
|
| T |
30989806 |
cctcaacgtaaagagcagccgctcgaggatcgtgccacttagcattctggcttcctctagaattgcttgatccttgttcaaaagaacgttgg------aa |
30989899 |
T |
|
| Q |
467 |
gccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaag |
566 |
Q |
| |
|
|||||| ||||||||||||||||||||| || | ||||| ||||||||| ||||||||| || ||||||||| | |||||||||| ||||| |
|
|
| T |
30989900 |
gccatatctttcacttctttccttgatctcacgaacagacgacttaatgtcttgaatctcagatgctattcgacgacgagggatcacagttt-------- |
30989991 |
T |
|
| Q |
567 |
tgactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgat |
646 |
Q |
| |
|
|||| || |||||||||| | ||| ||| ||| | |||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
30989992 |
----taatcttgtggagtaaagatacacatccaggatcatgaggatgttgtctcacatggatcaaataatcatcgatgat |
30990067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 168 - 561
Target Start/End: Complemental strand, 21945788 - 21945401
Alignment:
| Q |
168 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
267 |
Q |
| |
|
|||||||| ||||| |||| ||||||| || | || ||||||| ||||| || |||||||| ||||| || ||||| ||||||| ||||||||| |||| |
|
|
| T |
21945788 |
tatgattgagacacagtgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaactttcttggctagagtggtttttccttgccctc |
21945689 |
T |
|
| Q |
268 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
367 |
Q |
| |
|
||||||||||||| || | ||||||||||| || ||||| | |||| | | ||||||| | | || ||| || || || |||| |||| ||| |
|
|
| T |
21945688 |
ccattcctaccacggaaactacagtgcgctcctcccttccctttaccatccaatcaatcaacatgtccttttgtttttcgaaacccacaacttcagcttc |
21945589 |
T |
|
| Q |
368 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
467 |
Q |
| |
|
||||| || | ||||||| |||||||| |||||||| || || |||||||| ||| || ||||||||||||||||| |||| | ||| ||| |
|
|
| T |
21945588 |
gtcaatgtaaagagcagcctgccgagggtcgtgccatttggcattctggcttcccctagagctgcttgatccttgttcaaaagaacg------ttgaaag |
21945495 |
T |
|
| Q |
468 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttga |
561 |
Q |
| |
|
||||| || |||||||||||||||||||| | ||| ||||||||| ||||||||| || ||||||||| | ||||||||||||||||||| |
|
|
| T |
21945494 |
ccatatgttccacttctttccttgatcccacgaacatatgacttaacatcttgaatctcagatgctattcgacgacgagggatcatagttttga |
21945401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 137 - 307
Target Start/End: Original strand, 22615530 - 22615700
Alignment:
| Q |
137 |
caacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacc |
236 |
Q |
| |
|
|||||||| |||| |||||| |||||| |||||||||| |||||||||| |||||||||| | || |||||||| ||||| ||||| || ||||| |
|
|
| T |
22615530 |
caacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaaca |
22615629 |
T |
|
| Q |
237 |
tttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctcttctcttcc |
307 |
Q |
| |
|
|| ||||||||||||| ||| || || ||||||||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
22615630 |
ttcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcc |
22615700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 168 - 487
Target Start/End: Complemental strand, 22028164 - 22027851
Alignment:
| Q |
168 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
267 |
Q |
| |
|
|||||||| |||||||| | |||||||||| | || ||||||||||||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22028164 |
tatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22028065 |
T |
|
| Q |
268 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
367 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| | |||||| | || ||||||| ||| | || ||| ||| || |||| ||| ||| |
|
|
| T |
22028064 |
ccattcctaccacagacaccacagtgcgctcttcccttccctgtaccaaccaatcagtcaatctttttcttggcgcttcaaatcccacaacctcagcttc |
22027965 |
T |
|
| Q |
368 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
467 |
Q |
| |
|
|| || || | |||||||| ||||||||| | |||||| || || |||||||||| | | ||||| ||||||||||| |||| | ||||||| |
|
|
| T |
22027964 |
ctcgatgtaaagagcagccactcgagggtcgttccatttggcattcctgcttcctctagaattgcttgttccttgttcaaaagaacg------ttggaag |
22027871 |
T |
|
| Q |
468 |
ccatacctttcacttctttc |
487 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
22027870 |
ccatatctttcacttctttc |
22027851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 168 - 307
Target Start/End: Complemental strand, 22187152 - 22187013
Alignment:
| Q |
168 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
267 |
Q |
| |
|
|||||||| |||||||| | |||||||||| | || ||||||||||||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22187152 |
tatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22187053 |
T |
|
| Q |
268 |
ccattcctaccacagagatgacagtgcgctcttctcttcc |
307 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
22187052 |
ccattcctaccacagaaagaacagtgcgctcttcccttcc |
22187013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 168 - 561
Target Start/End: Complemental strand, 22052897 - 22052511
Alignment:
| Q |
168 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
267 |
Q |
| |
|
|||||||| |||||||| | |||||| ||| | || || ||||| |||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22052897 |
tatgattgagacactgtaatccatacccgacaatcaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22052798 |
T |
|
| Q |
268 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
367 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||| ||||| | |||| | | |||||||||| ||| | ||| ||| ||| || |||| ||| ||| |
|
|
| T |
22052797 |
ccattcctaccagagaaaccacagtgcgctcttcccttccctttaccatccaatcaatcaatctttttcttggtacttcaaatcccacaacctcagcttc |
22052698 |
T |
|
| Q |
368 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
467 |
Q |
| |
|
| | || | |||||||| ||||||||||| ||| || | || |||||||||| | | ||||| ||||||||||| |||| |||||| || |
|
|
| T |
22052697 |
cttgacgtaaagagcagccactcgagggtcataccacttggtattcctgcttcctctagaattgcttgttccttgttcaacagaacgttgga------ag |
22052604 |
T |
|
| Q |
468 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttga |
561 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||||| ||||| |||||||||| || ||||||||| | |||||| |||||||||||| |
|
|
| T |
22052603 |
ccatatctttcacttctttctgtgatcccatgaacagatgtcttaagatcttgaatcttagatgctattcgacgacgaggg-tcatagttttga |
22052511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 477 - 646
Target Start/End: Complemental strand, 21937014 - 21936845
Alignment:
| Q |
477 |
tcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatat |
576 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||| ||||||||| | |||||||||||||||| | |||| ||| ||| ||||||| ||||| |
|
|
| T |
21937014 |
tcacttctttccttgatcccacgaacagatgacttaatgtcttgaatctcagctgctattcgatggcgagaggtcatggttctgagtaagtgagaaatat |
21936915 |
T |
|
| Q |
577 |
tatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgat |
646 |
Q |
| |
|
|||| |||||||| | ||| ||| || | |||| | |||| |||||||||||||| ||||||||||| |
|
|
| T |
21936914 |
tatgaagtaaagctacacatccatgaccatgaggcttctgtcctacatggatcatatattcatcaatgat |
21936845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 452 - 561
Target Start/End: Original strand, 22615827 - 22615936
Alignment:
| Q |
452 |
aggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatc |
551 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| | ||||| ||||||| |||||||||| ||| | |||||||||||||||||| |
|
|
| T |
22615827 |
aggttggatttggaagccatatctttcacttctttccttgatcatacaaacagacgacttaacttcttgaatctttgacccaattcgatggcgagggatc |
22615926 |
T |
|
| Q |
552 |
atagttttga |
561 |
Q |
| |
|
| |||||||| |
|
|
| T |
22615927 |
aaagttttga |
22615936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 168 - 307
Target Start/End: Complemental strand, 21937317 - 21937178
Alignment:
| Q |
168 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
267 |
Q |
| |
|
|||| ||| |||||||||| |||||||||| | || |||||||| | ||| || |||||||| ||| | || || || ||||||| ||||||||| |||| |
|
|
| T |
21937317 |
tatgcttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctc |
21937218 |
T |
|
| Q |
268 |
ccattcctaccacagagatgacagtgcgctcttctcttcc |
307 |
Q |
| |
|
|||||||||||||||| | |||||||||||| | ||||| |
|
|
| T |
21937217 |
ccattcctaccacagaaacaacagtgcgctctgcccttcc |
21937178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 22208175 - 22208033
Alignment:
| Q |
177 |
gacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattccta |
276 |
Q |
| |
|
|||||||||| |||||||||| | || |||| ||| || |||||||||||||| ||||| | ||||||||||| | ||| ||||| |||||||| || | |
|
|
| T |
22208175 |
gacactgtgatccatacacgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaa |
22208076 |
T |
|
| Q |
277 |
ccacagagatgacagtgcgctcttctcttccatccaccaacaa |
319 |
Q |
| |
|
|||| |||| |||||| |||||| ||||||||| | |||||| |
|
|
| T |
22208075 |
ccaccgagacaacagtgagctcttttcttccatctatcaacaa |
22208033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 307
Target Start/End: Complemental strand, 21930585 - 21930446
Alignment:
| Q |
168 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
267 |
Q |
| |
|
|||||||| |||||||||| |||||| || | | || ||||| |||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
21930585 |
tatgattgagacactgtgatccatactcggaaatgaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
21930486 |
T |
|
| Q |
268 |
ccattcctaccacagagatgacagtgcgctcttctcttcc |
307 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
21930485 |
ccattcctaccacagacaccacagtgcgctcttcccttcc |
21930446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 18967373 - 18967423
Alignment:
| Q |
254 |
ttttccttgtcctcccattcctaccacagagatgacagtgcgctcttctct |
304 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
18967373 |
ttttccttgccctcccattcctaccacagagatgatagtgccctcttctct |
18967423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 2749122 - 2749064
Alignment:
| Q |
240 |
ttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctc |
298 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||||||| || || || |||||||| |
|
|
| T |
2749122 |
ttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc |
2749064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 2807394 - 2807336
Alignment:
| Q |
240 |
ttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctc |
298 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||||||| || || || |||||||| |
|
|
| T |
2807394 |
ttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc |
2807336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 2838611 - 2838669
Alignment:
| Q |
240 |
ttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctc |
298 |
Q |
| |
|
||||||||||||| ||||||| | || |||||||||||||| || ||||| |||||||| |
|
|
| T |
2838611 |
ttggcaagagtggtttttcctagaccccccattcctaccactgatatgactgtgcgctc |
2838669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 3e-93; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 9 - 645
Target Start/End: Complemental strand, 34980485 - 34979862
Alignment:
| Q |
9 |
acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| |||||||||| | ||||||||| || |||||||||||| |||||||| | ||| | |
|
|
| T |
34980485 |
acatcatcaaacacaaaaacatacctctttttctgcaagtaatttctcaactcataaatcaatgcatctcgatccatttcagtgatatcttcaagaggat |
34980386 |
T |
|
| Q |
109 |
cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtg |
208 |
Q |
| |
|
||||||||||||| ||||| || |||||||||| ||||||||| | || ||||||||||||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
34980385 |
gttctcctttttgttcgtaaagcttcttcaacatgcgtctcagcaatacttcaatattgtatgattgtgacactgtgatccatacacgacattcaaagtg |
34980286 |
T |
|
| Q |
209 |
tcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatg--acagtgcgctcttctcttc |
306 |
Q |
| |
|
||||| ||||||||||| || ||||| ||||| |||||||| ||||||||| ||||||||||| || ||||||||| |||||||||||| |||||| |
|
|
| T |
34980285 |
tcccacaacctctttgctatcaaaaacttttttagcaagagttatttttccttgccctcccattccaactacagagatgacacagtgcgctctactcttc |
34980186 |
T |
|
| Q |
307 |
catccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtcatgccattt |
406 |
Q |
| |
|
| | |||||| | |||||||||||||||||||||||||||||||||||| |||| |||| | || ||||||||||||||||| ||||| |||||||| |
|
|
| T |
34980185 |
cctttaccaaccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagattcgttgatgtataaagcagccattcgtgggtcgtgccattt |
34980086 |
T |
|
| Q |
407 |
cgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatcccatgcacagat |
506 |
Q |
| |
|
|| |||||| |||||| |||| ||| ||||| |||||||||||| ||||| |||||||||||||| ||||||||| ||| | |
|
|
| T |
34980085 |
ggcattttggattcctcgaaagctgctagatcc---------------ttggatttggaaaccatatctttcacttctttctttgatcccacaaacaact |
34980001 |
T |
|
| Q |
507 |
gacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatattatggagtaaagccatacacccaagattac |
606 |
Q |
| |
|
||||| ||| ||||||||| || |||||| || | |||| |||||||||||| |||||| ||| |||| ||||| || || || ||| ||| || |
|
|
| T |
34980000 |
gacttgatgtcttgaatctcagatgctatttgacgaagaggagtcatagttttgagcaagtgaggaatcttattgagtagagatatgcatccaggatcac |
34979901 |
T |
|
| Q |
607 |
gaggatgttgtctcacatggatcatataatcatcaatga |
645 |
Q |
| |
|
|||| || || | ||||||||||||||||||||||||| |
|
|
| T |
34979900 |
gaggttgctgccctacatggatcatataatcatcaatga |
34979862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 9 - 442
Target Start/End: Complemental strand, 34989540 - 34989107
Alignment:
| Q |
9 |
acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| |||||||||| ||||||||||| ||| |||||||||||| ||| ||| || ||| | |
|
|
| T |
34989540 |
acatcatcaaacacaaaaacatacctctttttctgcaagtactttctcaactcagaaatcaatgcacctcgatccatttcagtgattcctttaggaggtt |
34989441 |
T |
|
| Q |
109 |
cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtg |
208 |
Q |
| |
|
|||||||||||| ||||| || || |||||||| |||| ||| | || | |||| ||||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
34989440 |
tttctcctttttgtccgtaaagcttctccaacatgtgtctcgacaatacttcagtgttgtttgattgtgacactgtgatccatacacgacattcaaagtg |
34989341 |
T |
|
| Q |
209 |
tcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctcttctcttcca |
308 |
Q |
| |
|
||||| ||||||||||| || ||||||||||| |||||||||| ||||||||| |||||||| || || ||||||||||||||||||||| ||||||| |
|
|
| T |
34989340 |
tcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttccc |
34989241 |
T |
|
| Q |
309 |
tccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtcatgccatttcg |
408 |
Q |
| |
|
| |||| | | |||||||||||||||||||||||||||||||||| | |||| |||||| || ||||||||||||||||| | || | |||||| | |
|
|
| T |
34989240 |
tttaccagccaatcaatcaatctatttttgggttcttgaaagcctacgacttcagcttcatcgatgtataaagcagccattcgttgatcgttccatttgg |
34989141 |
T |
|
| Q |
409 |
ccttttggcttcctctaaagtggcttgatccttg |
442 |
Q |
| |
|
| |||||| ||||||||||| ||| |||||||| |
|
|
| T |
34989140 |
cgttttggtttcctctaaagctgctagatccttg |
34989107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 9 - 441
Target Start/End: Complemental strand, 34975705 - 34975273
Alignment:
| Q |
9 |
acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| |||||||||| ||||||||||| ||| |||||||||||| ||| ||| || ||| | |
|
|
| T |
34975705 |
acatcatcaaacacaaaaacatacctctttttctgcaagtactttctcaactcagaaatcaatgcacctcgatccatttcagtgattcctttaggaggtt |
34975606 |
T |
|
| Q |
109 |
cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtg |
208 |
Q |
| |
|
|||||||||||| ||||| || || |||||||| |||| ||| | || | |||| ||||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
34975605 |
tttctcctttttgtccgtaaagcttctccaacatgtgtctcgacaatacttcagtgttgtgtgattgtgacactgtgatccatacacgacattcaaagtg |
34975506 |
T |
|
| Q |
209 |
tcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctcttctcttcca |
308 |
Q |
| |
|
||||| ||||||||||| || ||||||||||| |||||||||| ||||||||| |||||||| || || ||||||||||||||||||||| ||||||| |
|
|
| T |
34975505 |
tcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttccc |
34975406 |
T |
|
| Q |
309 |
tccacc-aacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtcatgccatttc |
407 |
Q |
| |
|
| ||| |||||| |||||||| | ||||||||||||||||||||||||| |||| |||||| || |||||||||||||||| || || |||||||| |
|
|
| T |
34975405 |
tttaccaaacaat-caatcaatatttttttgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcgtggatcgtgccatttg |
34975307 |
T |
|
| Q |
408 |
gccttttggcttcctctaaagtggcttgatcctt |
441 |
Q |
| |
|
|| |||||| |||||||||| ||| ||||||| |
|
|
| T |
34975306 |
gcattttggactcctctaaagctgctagatcctt |
34975273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 2305628 - 2305842
Alignment:
| Q |
9 |
acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt |
108 |
Q |
| |
|
|||| |||||| ||||||||||||||||| | ||||||| |||||||||| | |||||||| ||| ||||||||||| ||||||||| || | |
|
|
| T |
2305628 |
acattatcaaacacaaaaacatacctcttattctgcaagtactttctcaactcaaaaatcaattcacctcgatccatttcatagatatctttaggtagaa |
2305727 |
T |
|
| Q |
109 |
cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtg |
208 |
Q |
| |
|
||| ||||||||| || || || |||||||||| |||||| ||| | |||||||||||||||||||||| ||||| |||||||||| |||| ||||| |
|
|
| T |
2305728 |
attctactttttgttcgtgaagcttcttcaacatgcatctcaacaagacttctatattgtatgattgtgacattgtgatccatacacgacattcaaagtg |
2305827 |
T |
|
| Q |
209 |
tcccatgacctcttt |
223 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
2305828 |
tcccacaacctcttt |
2305842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 455 - 560
Target Start/End: Complemental strand, 34989109 - 34989004
Alignment:
| Q |
455 |
ttggatttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcata |
554 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||||| ||| ||| |||||| ||| ||||||||| || |||||| || ||||||| ||||| |
|
|
| T |
34989109 |
ttggatttggaaaccatatctttcacttctttctttgattccacaaacaactgacttgatgtcttgaatctcagaagctatttgacggcgaggagtcata |
34989010 |
T |
|
| Q |
555 |
gttttg |
560 |
Q |
| |
|
|||||| |
|
|
| T |
34989009 |
gttttg |
34989004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 172 - 300
Target Start/End: Complemental strand, 27294708 - 27294580
Alignment:
| Q |
172 |
attgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccat |
271 |
Q |
| |
|
|||| |||||||||| |||||||||||| || | |||||| ||||| || |||||||| ||||| || ||| | ||||||| |||||||||||||||||| |
|
|
| T |
27294708 |
attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgtcctcccat |
27294609 |
T |
|
| Q |
272 |
tcctaccacagagatgacagtgcgctctt |
300 |
Q |
| |
|
|||||||||||| | ||||||| ||||| |
|
|
| T |
27294608 |
tcctaccacagaaactacagtgccctctt |
27294580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 461 - 586
Target Start/End: Complemental strand, 27294472 - 27294344
Alignment:
| Q |
461 |
ttggaagccatacctttcacttctttccttgatcccatgcacagatga---cttaatgccttgaatcttggacgctattcgatggcgagggatcatagtt |
557 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| | | || ||| ||| ||| ||||||| | | |||||| ||||| |||||||||||||| |
|
|
| T |
27294472 |
ttggaagccatatctttcacttctttccttgatcccgcgaataggtgatcacttcatgtcttgaatttcatatgctatttgatggagagggatcatagtt |
27294373 |
T |
|
| Q |
558 |
ttgactaagtgactaatattatggagtaa |
586 |
Q |
| |
|
|||| ||||||| ||| ||||||||||| |
|
|
| T |
27294372 |
ttgagaaagtgaccaatcttatggagtaa |
27294344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 461 - 561
Target Start/End: Original strand, 873151 - 873251
Alignment:
| Q |
461 |
ttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttg |
560 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| | | ||| ||||||||||| | ||||||| || ||||||| |||||||| ||||||||||| |
|
|
| T |
873151 |
ttggaagccatatctttcacttctttccttaatccaaagaacatatgacttaatgtcctgaatctcatacattattcgacggcgagggttcatagttttg |
873250 |
T |
|
| Q |
561 |
a |
561 |
Q |
| |
|
| |
|
|
| T |
873251 |
a |
873251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 461 - 561
Target Start/End: Original strand, 1234428 - 1234528
Alignment:
| Q |
461 |
ttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttg |
560 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| | | ||| ||||||||||| | ||||||| || ||||||| |||||||| ||||||||||| |
|
|
| T |
1234428 |
ttggaagccatatctttcacttctttccttaatccaaagaacatatgacttaatgtcctgaatctcatacattattcgacggcgagggttcatagttttg |
1234527 |
T |
|
| Q |
561 |
a |
561 |
Q |
| |
|
| |
|
|
| T |
1234528 |
a |
1234528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 29610855 - 29610903
Alignment:
| Q |
150 |
agcaacccctctatattgtatgattgtgacactgtgacccatacacgat |
198 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
29610855 |
agcaatccttctatattgtatgattgtgatactgtgatccatacacgat |
29610903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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