View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_high_71 (Length: 216)

Name: NF15254_high_71
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_high_71
NF15254_high_71
[»] chr3 (10 HSPs)
chr3 (14-216)||(8318897-8319099)
chr3 (16-78)||(10917913-10917976)
chr3 (16-62)||(19908319-19908365)
chr3 (16-62)||(21303395-21303441)
chr3 (16-62)||(22349421-22349467)
chr3 (16-78)||(21301913-21301976)
chr3 (16-62)||(821555-821601)
chr3 (16-58)||(18458465-18458507)
chr3 (18-90)||(10744885-10744958)
chr3 (16-57)||(28728961-28729002)
[»] scaffold0005 (1 HSPs)
scaffold0005 (14-88)||(168337-168412)
[»] chr4 (9 HSPs)
chr4 (14-88)||(14648880-14648955)
chr4 (16-62)||(22526376-22526422)
chr4 (16-62)||(11521232-11521278)
chr4 (16-97)||(13692710-13692792)
chr4 (14-58)||(11490548-11490592)
chr4 (16-62)||(13908866-13908912)
chr4 (18-78)||(13128917-13128978)
chr4 (17-62)||(19374855-19374899)
chr4 (18-62)||(22176005-22176049)
[»] chr7 (12 HSPs)
chr7 (21-78)||(21230307-21230365)
chr7 (16-78)||(23099993-23100056)
chr7 (16-88)||(7318258-7318331)
chr7 (14-62)||(8054528-8054576)
chr7 (14-88)||(1584530-1584603)
chr7 (16-89)||(14196014-14196087)
chr7 (14-78)||(10587063-10587128)
chr7 (18-62)||(2953585-2953628)
chr7 (16-48)||(7492304-7492336)
chr7 (14-90)||(11803062-11803140)
chr7 (19-78)||(15869590-15869650)
chr7 (18-62)||(18466017-18466061)
[»] chr5 (9 HSPs)
chr5 (14-62)||(15375921-15375969)
chr5 (16-62)||(19283896-19283942)
chr5 (16-74)||(20315471-20315529)
chr5 (17-54)||(20858705-20858742)
chr5 (17-74)||(24140442-24140499)
chr5 (14-78)||(25550543-25550608)
chr5 (14-62)||(17185475-17185523)
chr5 (18-62)||(22755533-22755577)
chr5 (14-74)||(34128636-34128696)
[»] chr6 (9 HSPs)
chr6 (16-89)||(9726006-9726080)
chr6 (16-88)||(21907417-21907490)
chr6 (14-58)||(22410366-22410410)
chr6 (16-58)||(4339751-4339793)
chr6 (16-62)||(17729164-17729210)
chr6 (16-62)||(21672476-21672522)
chr6 (16-58)||(28933701-28933743)
chr6 (18-62)||(23645810-23645854)
chr6 (14-54)||(24657494-24657534)
[»] chr8 (10 HSPs)
chr8 (14-78)||(29382400-29382465)
chr8 (18-89)||(34497099-34497171)
chr8 (16-90)||(5850924-5850999)
chr8 (18-88)||(30806540-30806611)
chr8 (16-58)||(2637614-2637656)
chr8 (16-62)||(17976631-17976677)
chr8 (16-62)||(24110696-24110742)
chr8 (16-62)||(30783782-30783828)
chr8 (14-78)||(24114321-24114386)
chr8 (18-62)||(17101936-17101980)
[»] chr2 (8 HSPs)
chr2 (14-74)||(25196010-25196070)
chr2 (14-74)||(25530445-25530507)
chr2 (16-62)||(17743517-17743563)
chr2 (16-62)||(27909160-27909206)
chr2 (16-88)||(13776324-13776396)
chr2 (13-62)||(28770481-28770530)
chr2 (14-54)||(25535294-25535334)
chr2 (16-68)||(29142967-29143019)
[»] scaffold0838 (1 HSPs)
scaffold0838 (16-62)||(2382-2428)
[»] scaffold0832 (1 HSPs)
scaffold0832 (16-62)||(2413-2459)
[»] chr1 (10 HSPs)
chr1 (16-62)||(3591694-3591740)
chr1 (16-62)||(16787767-16787813)
chr1 (16-62)||(21449101-21449147)
chr1 (14-60)||(24306344-24306390)
chr1 (16-62)||(33190689-33190735)
chr1 (17-62)||(15544008-15544053)
chr1 (18-62)||(16179019-16179063)
chr1 (16-91)||(16359853-16359928)
chr1 (14-62)||(18736279-18736327)
chr1 (18-58)||(29242535-29242575)
[»] scaffold0008 (1 HSPs)
scaffold0008 (14-62)||(54872-54920)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 8319099 - 8318897
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacgattgctatacttgcctaatatgaccatcaactaccatgtctctcacctcccttt 113  Q
    ||||||||||| ||| ||||||||||| ||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8319099 cctgtggatactatattctacttatcacttcattacttggtaaacgattggtatacttgcctaatctgaccatcaactaccatgtctctcacctcccttt 8319000  T
Q  114 ggtgcggtctctcaccattgagatccctccagtgacgaatttttctccaccgtcgcctcctatctgtccgctcactgtcacctccccatgataaatctcc 213  Q
    |||||  ||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8318999 ggtgctctctctcaccattgagattcctctagcgacaaatttttctccaccgtcgcctcctatctatccgctcactgtcacctccccatgataaatctcc 8318900  T
Q  214 tct 216  Q
    |||    
T  8318899 tct 8318897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 10917976 - 10917913
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaat 78  Q
    ||||||||||||||||||||||||| || |||||||| ||||||| ||| || |||||||||||    
T  10917976 tgtggatacgatactctacttatcactttattatttggtaaacgatttggtacacttgcctaat 10917913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 19908365 - 19908319
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||| |||||||||||| |||||||| |||||||||    
T  19908365 tgtggatacgatactatacttatcattttattatttggtaaacgatt 19908319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 21303395 - 21303441
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||||    
T  21303395 tgtggctacgatactctacttatcattttattatttggtaaacgatt 21303441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 22349467 - 22349421
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||||| || |||||||| |||||||||    
T  22349467 tgtggatacgatactctacttatcactttattatttggtaaacgatt 22349421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 21301976 - 21301913
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaat 78  Q
    ||||||||||||||||||||||||| || |||| ||| ||||||| ||| || |||||||||||    
T  21301976 tgtggatacgatactctacttatcactttattacttggtaaacgatttggtacacttgcctaat 21301913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 821555 - 821601
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||||| || |||| ||| |||||||||    
T  821555 tgtggatacgatactctacttatcactttattacttggtaaacgatt 821601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 18458465 - 18458507
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaac 58  Q
    ||||||||||||||||||||||||| || |||| |||||||||    
T  18458465 tgtggatacgatactctacttatcactttattacttgataaac 18458507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 10744958 - 10744885
Alignment:
Q  18 tggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaatatgaccatcaac 90  Q
    |||| |||||||||||||||||| || |||| ||| ||||||| ||| || ||||||||||| ||| |||||||    
T  10744958 tggaaacgatactctacttatcactttattacttggtaaacgatttggtaaacttgcctaatttgatcatcaac 10744885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 28729002 - 28728961
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaa 57  Q
    ||||||||||||||||||||||||| || |||| ||||||||    
T  28729002 tgtggatacgatactctacttatcactttattacttgataaa 28728961  T

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Target: scaffold0005 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 168337 - 168412
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaatatgaccatca 88  Q
    ||||||||||||||||||||||||||| || |||| ||| ||||||| ||| || ||||||||||| |||||||||    
T  168337 cctgtggatacgatactctacttatcactttattacttggtaaacgatttggtacacttgcctaatctgaccatca 168412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 14648955 - 14648880
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaatatgaccatca 88  Q
    ||||||||||||||||||||||||||| || |||| ||| ||||||| ||| || ||||||||||| |||||||||    
T  14648955 cctgtggatacgatactctacttatcactttattacttggtaaacgatttggtacacttgcctaatctgaccatca 14648880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 22526422 - 22526376
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||    
T  22526422 tgtggatacgatactctacttatcactttattatttgataaacgatt 22526376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 11521232 - 11521278
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    |||| |||||||||||||||||||| || ||||||||||||||||||    
T  11521232 tgtgtatacgatactctacttatcactttattatttgataaacgatt 11521278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 13692710 - 13692792
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaatatgaccatcaactaccatg 97  Q
    |||||||| |||||||||||||||| || |||| ||| ||||||| ||| || ||||||||||| ||||||||| | ||||||    
T  13692710 tgtggatatgatactctacttatcactttattacttggtaaacgatttggtacacttgcctaatctgaccatcatccaccatg 13692792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 11490592 - 11490548
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaac 58  Q
    ||||||||||||||||||||||||||| || |||| |||||||||    
T  11490592 cctgtggatacgatactctacttatcactttattacttgataaac 11490548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 13908912 - 13908866
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||||| || |||| ||| |||||||||    
T  13908912 tgtggatacgatactctacttatcactttattacttggtaaacgatt 13908866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 13128917 - 13128978
Alignment:
Q  18 tggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaat 78  Q
    ||||||| |||||||||||||||||| |||| ||| ||||||| ||| || |||||||||||    
T  13128917 tggatacaatactctacttatcattttattacttggtaaacgatttggtacacttgcctaat 13128978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 19374855 - 19374899
Alignment:
Q  17 gtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||||    
T  19374855 gtggatacgatactctactta-cattttattacttgataaacgatt 19374899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 22176005 - 22176049
Alignment:
Q  18 tggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||| ||||||||||||||| || |||| |||||||||||||    
T  22176005 tggatacaatactctacttatcactttattacttgataaacgatt 22176049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 21230365 - 21230307
Alignment:
Q  21 atacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaat 78  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||    
T  21230365 atacgatactctacttatcattttattatttggtaaacgatttgatatacttgcctaat 21230307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 23099993 - 23100056
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaat 78  Q
    ||||||||||||||||||||||||| || |||||||| ||||||| ||| || |||||||||||    
T  23099993 tgtggatacgatactctacttatcactttattatttggtaaacgatttggtacacttgcctaat 23100056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 7318331 - 7318258
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgat-tgctatacttgcctaatatgaccatca 88  Q
    ||||||||||||||||||||||||| || |||| ||| |||||||| || || |||||||||||  ||||||||    
T  7318331 tgtggatacgatactctacttatcactttattacttggtaaacgatatggtacacttgcctaatccgaccatca 7318258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 8054528 - 8054576
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    |||||| |||||||||||||||||||| || |||||||| |||||||||    
T  8054528 cctgtgaatacgatactctacttatcactttattatttggtaaacgatt 8054576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 1584603 - 1584530
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacgattgctatacttgcctaatatgaccatca 88  Q
    |||||||||||||||||| |||||||| || |||| ||| |||| ||||| || |||||||||||  ||||||||    
T  1584603 cctgtggatacgatactc-acttatcactttattacttggtaaatgattggtacacttgcctaatccgaccatca 1584530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 14196014 - 14196087
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaatatgaccatcaa 89  Q
    |||||||||| |||| |||||| || || |||||||||||||||| ||| || ||||||||||| ||||||||||    
T  14196014 tgtggatacggtactttactta-cactttattatttgataaacgatttggtacacttgcctaatctgaccatcaa 14196087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 10587063 - 10587128
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaat 78  Q
    ||||| ||||||||||||||||||||| || |||| ||| ||||||| ||| || |||||||||||    
T  10587063 cctgtagatacgatactctacttatcactttattacttggtaaacgatttggtacacttgcctaat 10587128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 2953628 - 2953585
Alignment:
Q  18 tggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    |||||||||||||||||||| || || ||||||||||||||||||    
T  2953628 tggatacgatactctactta-cactttattatttgataaacgatt 2953585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 7492304 - 7492336
Alignment:
Q  16 tgtggatacgatactctacttatcatttcatta 48  Q
    |||||||||||||||||||||||||||| ||||    
T  7492304 tgtggatacgatactctacttatcattttatta 7492336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 11803140 - 11803062
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcatta-tttgataaacgattgctatacttgc--ctaatatgaccatcaac 90  Q
    ||||||||||||||||||||||||||| || |||| |||| |||| ||||| || ||||||  ||||| |||||||||||    
T  11803140 cctgtggatacgatactctacttatcactttattactttgttaaa-gattggtacacttgccactaatttgaccatcaac 11803062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 15869650 - 15869590
Alignment:
Q  19 ggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaat 78  Q
    |||||||||||||||||||||| || |||| ||| ||||||| ||| || |||||||||||    
T  15869650 ggatacgatactctacttatcactttattacttggtaaacgatttgatacacttgcctaat 15869590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 18466061 - 18466017
Alignment:
Q  18 tggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    |||||||| |||||||||||||| || ||||||||||||| ||||    
T  18466061 tggatacgttactctacttatcactttattatttgataaatgatt 18466017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 15375921 - 15375969
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    |||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  15375921 cctgtggataggatactctacttatcattttattatttggtaaacgatt 15375969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 19283896 - 19283942
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||| ||||||||||||||| || |||||||| |||||||||    
T  19283896 tgtggatacaatactctacttatcactttattatttggtaaacgatt 19283942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 20315471 - 20315529
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgattgctatacttgcc 74  Q
    |||||||||||||||||||||||||  | |||| ||| |||||||||| || |||||||    
T  20315471 tgtggatacgatactctacttatcacattattacttggtaaacgattggtacacttgcc 20315529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 20858742 - 20858705
Alignment:
Q  17 gtggatacgatactctacttatcatttcattatttgat 54  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  20858742 gtggatacgatactctacttatcattttattacttgat 20858705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 24140499 - 24140442
Alignment:
Q  17 gtggatacgatactctacttatcatttcattatttgataaacgattgctatacttgcc 74  Q
    |||||||| ||||||||||||||| || |||| ||| |||||||||| || |||||||    
T  24140499 gtggatacaatactctacttatcactttattacttggtaaacgattggtacacttgcc 24140442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 25550543 - 25550608
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaat 78  Q
    |||||||||| |||||||||||||||| || |||| ||| ||||||| ||| || |||||||||||    
T  25550543 cctgtggatatgatactctacttatcactttattacttggtaaacgatttgatacacttgcctaat 25550608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 17185523 - 17185475
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||| ||||||||||||||||||||| || |||||||| |||| ||||    
T  17185523 cctgtagatacgatactctacttatcactttattatttggtaaatgatt 17185475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 22755577 - 22755533
Alignment:
Q  18 tggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||  ||||||| ||| |||||||||    
T  22755577 tggatacgatactctacttatctcttcattacttggtaaacgatt 22755533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 34128696 - 34128636
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacgattgctatacttgcc 74  Q
    ||||||||||||||| ||||||||||| || |||| ||| | |||||||| || |||||||    
T  34128696 cctgtggatacgatattctacttatcactttattacttggtcaacgattggtacacttgcc 34128636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 9726080 - 9726006
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaatatgaccatcaa 89  Q
    ||||||||||||||||||||||||| || |||| ||| ||||||| ||| || |||||||||||  |||||||||    
T  9726080 tgtggatacgatactctacttatcactttattacttggtaaacgatttggtacacttgcctaatccgaccatcaa 9726006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 21907490 - 21907417
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaatatgaccatca 88  Q
    ||||||||||||||| ||||||||| || |||| ||| ||||||| ||| ||||||||||||||  ||||||||    
T  21907490 tgtggatacgatactttacttatcactttattacttggtaaacgatttggtatacttgcctaatccgaccatca 21907417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 22410366 - 22410410
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaac 58  Q
    |||||||||||||||||||||||||||||| |||| ||| |||||    
T  22410366 cctgtggatacgatactctacttatcattttattacttggtaaac 22410410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 4339793 - 4339751
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaac 58  Q
    ||||||||| ||||||||||||||| || ||||||||||||||    
T  4339793 tgtggatacaatactctacttatcactttattatttgataaac 4339751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 17729210 - 17729164
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||||| || |||| ||| |||||||||    
T  17729210 tgtggatacgatactctacttatcactttattacttggtaaacgatt 17729164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 21672476 - 21672522
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||||| || |||| ||| |||||||||    
T  21672476 tgtggatacgatactctacttatcactttattacttggtaaacgatt 21672522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 28933701 - 28933743
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaac 58  Q
    ||||||||||||||||||||||||| || |||||||| |||||    
T  28933701 tgtggatacgatactctacttatcactttattatttgctaaac 28933743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 23645810 - 23645854
Alignment:
Q  18 tggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||| || |||| ||| |||||||||    
T  23645810 tggatacgatactctacttatcactttattacttggtaaacgatt 23645854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 24657494 - 24657534
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgat 54  Q
    |||||||||||||||||| ||||||||||| |||| |||||    
T  24657494 cctgtggatacgatactcgacttatcattttattacttgat 24657534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 29382400 - 29382465
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaat 78  Q
    ||||||||||||||||||||||||||| || |||| ||| ||||||| ||| || |||||||||||    
T  29382400 cctgtggatacgatactctacttatcactttattacttggtaaacgatttggtacacttgcctaat 29382465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 34497171 - 34497099
Alignment:
Q  18 tggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaatatgaccatcaa 89  Q
    |||||||||||||||||| |||| || |||| ||| ||||||| ||| || ||||||||||| ||||||||||    
T  34497171 tggatacgatactctactaatcactttattacttggtaaacgatttgatagacttgcctaatctgaccatcaa 34497099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 5850999 - 5850924
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt-gctatacttgcctaatatgaccatcaac 90  Q
    ||||||||||||||||||||||||| || |||| ||| ||||||||| | || ||||| |||||  ||||||||||    
T  5850999 tgtggatacgatactctacttatcactttattacttggtaaacgattaggtacacttgactaatccgaccatcaac 5850924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 30806540 - 30806611
Alignment:
Q  18 tggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaatatgaccatca 88  Q
    ||||||||||||||||||||||| || |||| || |||||||| ||| || |||||||||||  ||||||||    
T  30806540 tggatacgatactctacttatcactttattacttaataaacgatttgatacacttgcctaatccgaccatca 30806611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 2637656 - 2637614
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaac 58  Q
    ||||||||||||||||||||||||| || |||| |||||||||    
T  2637656 tgtggatacgatactctacttatcactttattacttgataaac 2637614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 17976677 - 17976631
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||||| || |||| |||||||| ||||    
T  17976677 tgtggatacgatactctacttatcactttattacttgataaatgatt 17976631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 24110696 - 24110742
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    |||||||||||||||||||||||||||| |||| ||| |||| ||||    
T  24110696 tgtggatacgatactctacttatcattttattacttggtaaatgatt 24110742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 30783782 - 30783828
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||||| || |||| ||| |||||||||    
T  30783782 tgtggatacgatactctacttatcactttattacttggtaaacgatt 30783828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 24114321 - 24114386
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaat 78  Q
    |||| ||||||||||||||||||||||||| |||| ||| ||||| | ||| || |||||||||||    
T  24114321 cctgcggatacgatactctacttatcattttattacttggtaaacaatttggtacacttgcctaat 24114386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 17101936 - 17101980
Alignment:
Q  18 tggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||| || |||| ||| |||||||||    
T  17101936 tggatacgatactctacttatcactttattacttggtaaacgatt 17101980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 25196070 - 25196010
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacgattgctatacttgcc 74  Q
    |||||||||| |||||||||||||||| || |||| ||| |||||||||| || |||||||    
T  25196070 cctgtggatatgatactctacttatcactttattacttggtaaacgattggtacacttgcc 25196010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 25530507 - 25530445
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgat--aaacgattgctatacttgcc 74  Q
    ||||||||||||||||||||||||||| || |||| |||||  ||||||||| || |||||||    
T  25530507 cctgtggatacgatactctacttatcactttattacttgatgaaaacgattggtacacttgcc 25530445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 17743517 - 17743563
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||||| || |||| ||| |||||||||    
T  17743517 tgtggatacgatactctacttatcactttattacttggtaaacgatt 17743563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 27909160 - 27909206
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||||| || |||| ||| |||||||||    
T  27909160 tgtggatacgatactctacttatcactttattacttggtaaacgatt 27909206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 13776396 - 13776324
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacga-ttgctatacttgcctaatatgaccatca 88  Q
    |||||||||||||||| |||||||| || ||||||| |||||||| |||||| ||||| |||||  ||||||||    
T  13776396 tgtggatacgatactc-acttatcactttattatttaataaacgatttgctacacttgtctaattcgaccatca 13776324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 28770481 - 28770530
Alignment:
Q  13 acctgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    |||| ||||||||||||||||||||||| || |||||||| |||| ||||    
T  28770481 acctatggatacgatactctacttatcactttattatttggtaaaggatt 28770530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 25535334 - 25535294
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgat 54  Q
    ||||||||||||||||||||||||||| || |||| |||||    
T  25535334 cctgtggatacgatactctacttatcactttattacttgat 25535294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 29143019 - 29142967
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgattgctata 68  Q
    |||||||||| ||||||||||||| ||| |||| ||||| |||||||| ||||    
T  29143019 tgtggatacggtactctacttatcgttttattacttgattaacgattggtata 29142967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0838 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 2428 - 2382
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||||  || |||||||| |||||||||    
T  2428 tgtggatacgatactctacttatccctttattatttggtaaacgatt 2382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0832 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 2459 - 2413
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||||  || |||||||| |||||||||    
T  2459 tgtggatacgatactctacttatccctttattatttggtaaacgatt 2413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 3591694 - 3591740
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    |||||||||||||||||| |||||| || |||| |||||||||||||    
T  3591694 tgtggatacgatactctatttatcactttattacttgataaacgatt 3591740  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 16787767 - 16787813
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    |||| |||||||||||||||||||| || |||| |||||||||||||    
T  16787767 tgtgaatacgatactctacttatcactttattacttgataaacgatt 16787813  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 21449147 - 21449101
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||||| || |||| ||| |||||||||    
T  21449147 tgtggatacgatactctacttatcactttattacttggtaaacgatt 21449101  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 24306344 - 24306390
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacga 60  Q
    ||||||||||||||||||||||||||| || |||| ||| |||||||    
T  24306344 cctgtggatacgatactctacttatcactttattacttggtaaacga 24306390  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 33190735 - 33190689
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||  |||||||||||||||||| |||| |||||||||||||    
T  33190735 tgtggatattatactctacttatcattttattacttgataaacgatt 33190689  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 15544008 - 15544053
Alignment:
Q  17 gtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    |||||||||||||||||||||||| || |||| ||| |||||||||    
T  15544008 gtggatacgatactctacttatcactttattacttggtaaacgatt 15544053  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 16179063 - 16179019
Alignment:
Q  18 tggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||||||||||||||| || |||| ||| |||||||||    
T  16179063 tggatacgatactctacttatcagtttattacttgttaaacgatt 16179019  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 16359928 - 16359853
Alignment:
Q  16 tgtggatacgatactctacttatcatttcattatttgataaacgatt-gctatacttgcctaatatgaccatcaact 91  Q
    ||||||||| ||||| |||||| ||||| |||| ||| ||||||||| | || ||||||||||| ||||||||||||    
T  16359928 tgtggatacaatactatactta-cattttattacttggtaaacgatttggtacacttgcctaatctgaccatcaact 16359853  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 18736279 - 18736327
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    |||||||||||||||| |||||||||| || |||| ||| |||||||||    
T  18736279 cctgtggatacgatacactacttatcactttattacttgttaaacgatt 18736327  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 29242575 - 29242535
Alignment:
Q  18 tggatacgatactctacttatcatttcattatttgataaac 58  Q
    ||||||||||||||||||||||| || |||| |||||||||    
T  29242575 tggatacgatactctacttatcactttattacttgataaac 29242535  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 54920 - 54872
Alignment:
Q  14 cctgtggatacgatactctacttatcatttcattatttgataaacgatt 62  Q
    ||||||||||| ||||||||||||||| || |||| ||| |||||||||    
T  54920 cctgtggatacaatactctacttatcactttattacttggtaaacgatt 54872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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