View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15254_high_72 (Length: 212)

Name: NF15254_high_72
Description: NF15254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15254_high_72
NF15254_high_72
[»] chr3 (33 HSPs)
chr3 (6-203)||(10500749-10500946)
chr3 (11-203)||(13289845-13290037)
chr3 (11-203)||(13161160-13161352)
chr3 (11-203)||(13171211-13171403)
chr3 (11-203)||(13333084-13333276)
chr3 (11-203)||(13344269-13344461)
chr3 (119-195)||(10077557-10077633)
chr3 (119-201)||(10517773-10517855)
chr3 (119-201)||(11781681-11781763)
chr3 (22-195)||(10433749-10433922)
chr3 (119-195)||(10663814-10663890)
chr3 (22-174)||(10127119-10127271)
chr3 (128-187)||(8861583-8861642)
chr3 (128-187)||(11130739-11130798)
chr3 (128-187)||(11148567-11148626)
chr3 (128-187)||(11159730-11159789)
chr3 (22-195)||(9849930-9850103)
chr3 (22-195)||(11769425-11769598)
chr3 (119-195)||(10032291-10032367)
chr3 (22-93)||(10184433-10184504)
chr3 (22-195)||(9839052-9839225)
chr3 (119-195)||(10260986-10261062)
chr3 (16-78)||(10077454-10077516)
chr3 (22-64)||(10260889-10260931)
chr3 (119-188)||(10089078-10089147)
chr3 (119-188)||(10195961-10196030)
chr3 (22-195)||(10375550-10375723)
chr3 (22-78)||(8861477-8861533)
chr3 (119-195)||(10363503-10363579)
chr3 (22-78)||(10889497-10889553)
chr3 (22-78)||(11130848-11130904)
chr3 (22-78)||(11148676-11148732)
chr3 (22-78)||(11159839-11159895)
[»] chr8 (2 HSPs)
chr8 (8-201)||(11485215-11485408)
chr8 (6-201)||(44957387-44957582)
[»] chr4 (1 HSPs)
chr4 (6-201)||(17852622-17852817)
[»] scaffold0002 (3 HSPs)
scaffold0002 (11-203)||(135585-135777)
scaffold0002 (11-203)||(145636-145828)
scaffold0002 (119-203)||(153941-154025)
[»] chr2 (1 HSPs)
chr2 (119-195)||(26907185-26907261)
[»] chr6 (1 HSPs)
chr6 (22-57)||(31679576-31679611)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 10500749 - 10500946
Alignment:
Q  6 aacatttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagaga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10500749 aacatttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgactaacagaga 10500848  T
Q  106 aacaggaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10500849 aacaggaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 10500946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 13289845 - 13290037
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| ||| |||||||  |||||||||| ||||||  ||| |||||||||||| ||||||| ||||  ||| |  ||||||    
T  13289845 ttgagggataaaagatttttgttggtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacag 13289944  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  13289945 gaagtagggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 13290037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 13161160 - 13161352
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| ||| |||||||  |||||||||| ||||||  ||| |||||||||||| ||||||| ||||  ||| |  |||| |    
T  13161160 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 13161259  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  13161260 gaagtagggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 13161352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 13171211 - 13171403
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| ||| |||||||  |||||||||| ||||||  ||| |||||||||||| ||||||| ||||  ||| |  |||| |    
T  13171211 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 13171310  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  13171311 gaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 13171403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 13333084 - 13333276
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| |||||||| ||| |||||||||||| ||||  ||| |||||||||||| |||||||  |||  ||| |  ||| ||    
T  13333084 ttgagggataaaagatttttgttagtgttggatgacctgtggaatgacaattataatgattgggatgagttagtaactccactgattaacggcaaaaaag 13333183  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  13333184 gaagtagggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 13333276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 13344269 - 13344461
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| ||| |||||||  |||||||||| ||||||  ||| |||||||||||| ||||||| ||||  ||| |  |||| |    
T  13344269 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 13344368  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  13344369 gaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 13344461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 10077557 - 10077633
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    ||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||| |||| |||||||||| ||||    
T  10077557 gtgattataacaacacgccaacaaaaagttgcagaggtggcacgcacatttcctatacatatattagaacctttatc 10077633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 10517773 - 10517855
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatga 201  Q
    ||||| |||||||| ||| ||||||||||||||||||| |||  |||||||||||||||  ||||||||||||||||| ||||    
T  10517773 gtgattataacaacgcgccaacaaaaagttgcagaggtggcacacacatttcctattcaggaattagaacctctatctcatga 10517855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 11781763 - 11781681
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatga 201  Q
    ||||| |||||||| ||| ||||||||||||||||||| |||  ||||||||||||||||  |||||||||||||||| ||||    
T  11781763 gtgattataacaactcgccaacaaaaagttgcagaggtggcacacacatttcctattcatgcattagaacctctatctcatga 11781681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 10433922 - 10433749
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacaggaggcaaagtg 121  Q
    ||||||||||||||||||||||||  |||||||||||| ||||  ||| |||| |||  || ||| |||||| |   |  || || | ||| |||  |||    
T  10433922 aagatttttgtttgtgttggacgatctgtggaatgacaattataatgattggggtgaactagtaagtcccttcattgatggaaaacccggaagcatggtg 10433823  T
Q  122 ataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    || |||||||| ||| ||||||||||||| ||||| |||  |||||||||||| ||||||||||||| ||||||    
T  10433822 attataacaacgcgccaacaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatc 10433749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 10663814 - 10663890
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    ||||| |||||||| ||||||||||||||||| ||||| |||  |||||||||||| ||||||||||||| ||||||    
T  10663814 gtgattataacaacgcgcgaacaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatc 10663890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 10127119 - 10127271
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacaggaggcaaagtg 121  Q
    ||||||||||||||||||||||||  | |||||||||| || |  ||| ||||||||| || ||| |||||| |  ||  || || | ||| |||  |||    
T  10127119 aagatttttgtttgtgttggacgatctatggaatgacaattgtaatgattgggatgagctagtaagtcccttcattaatggaaaacctggaagcatggtg 10127218  T
Q  122 ataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctat 174  Q
    || |||||||| ||| ||||||||||||| ||||| ||| |||||||||||||    
T  10127219 attataacaacgcgccaacaaaaagttgctgaggtggcacgcacatttcctat 10127271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 8861583 - 8861642
Alignment:
Q  128 acaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaa 187  Q
    ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  8861583 acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaa 8861642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 11130798 - 11130739
Alignment:
Q  128 acaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaa 187  Q
    ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  11130798 acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaa 11130739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 11148626 - 11148567
Alignment:
Q  128 acaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaa 187  Q
    ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  11148626 acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaa 11148567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 11159789 - 11159730
Alignment:
Q  128 acaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaa 187  Q
    ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  11159789 acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaa 11159730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 9849930 - 9850103
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacaggaggcaaagtg 121  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||  ||| |||| |||  || ||| |||||| |   |  || || | ||| |||  |||    
T  9849930 aagatttttgtttgtgttggatgatttgtggaatgacaattataatgattggggtgaactagtaagtcccttcattgatggaaaacccggaagcatggtg 9850029  T
Q  122 ataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    || |||||||||||| ||||||||||||| ||||| |||  ||||||||| || ||||||||||| | ||||||    
T  9850030 attataacaacacgccaacaaaaagttgctgaggtggcacacacatttccaatacataaattagatcttctatc 9850103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 11769425 - 11769598
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacaggaggcaaagtg 121  Q
    |||||||||||||||||| || || ||||||||||||| ||||  ||| |||| |||  || ||| |||||| |  ||  || || | ||| |||  |||    
T  11769425 aagatttttgtttgtgttagatgatatgtggaatgacaattataatgattggggtgaactagtaagtcccttcagtaatggaaaacctggaagcatggtg 11769524  T
Q  122 ataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    || |||||||||||| ||| ||||||||| ||||| |||  |||||||||||| ||| ||||| ||| ||||||    
T  11769525 attataacaacacgccaacgaaaagttgctgaggtggcacacacatttcctatacatgaattaaaacttctatc 11769598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 10032291 - 10032367
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    ||||| |||||||||||| ||| ||||||||| ||||| ||||||||||||||||| ||| || || ||| ||||||    
T  10032291 gtgattataacaacacgccaacgaaaagttgctgaggtggcatgcacatttcctatacatgaactaaaacttctatc 10032367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 10184433 - 10184504
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactccctt 93  Q
    ||||||||||||||| ||||| ||  |||||||||||||||||| ||| ||||||||| || ||| ||||||    
T  10184433 aagatttttgtttgtattggatgatctgtggaatgacagttatgatgattgggatgagctagtaagtccctt 10184504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 9839052 - 9839225
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacaggaggcaaagtg 121  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||  ||| |||| |||  || ||| |||||| |   |  || || | ||| |||  |||    
T  9839052 aagatttttgtttgtgttggatgatttgtggaatgacaattataatgattggggtgaactagtaagtcccttcattgatggaaaacccggaagcatggtg 9839151  T
Q  122 ataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    || |||||||| ||| ||||||||||||| ||||| |||  ||||||||| || ||||||||||| | ||||||    
T  9839152 attataacaacgcgccaacaaaaagttgctgaggtggcacacacatttccaatacataaattagatcttctatc 9839225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 10260986 - 10261062
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    ||||| |||||||| ||  ||||||||||||| ||||| ||||||||||||||||| ||| || || ||| ||||||    
T  10260986 gtgattataacaacgcggcaacaaaaagttgctgaggtggcatgcacatttcctatacatgaactaaaacttctatc 10261062  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 10077454 - 10077516
Alignment:
Q  16 ggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatga 78  Q
    ||||| |||||||||||||||||| || || ||||||||||||| ||||  ||| ||||||||    
T  10077454 ggataaaagatttttgtttgtgttagatgatatgtggaatgacaattatagtgattgggatga 10077516  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 10260889 - 10260931
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttat 64  Q
    ||||||||||||||||||||||||  |||||||||||| ||||    
T  10260889 aagatttttgtttgtgttggacgatctgtggaatgacaattat 10260931  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 10089078 - 10089147
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaac 188  Q
    ||||| |||||||| ||| || ||||||| || ||||| |||  |||||||||||| |||||||||||||    
T  10089078 gtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaac 10089147  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 10195961 - 10196030
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaac 188  Q
    ||||| |||||||| ||| || ||||||| || ||||| |||  |||||||||||| |||||||||||||    
T  10195961 gtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaac 10196030  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 10375723 - 10375550
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacaggaggcaaagtg 121  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||  ||| |||| |||  || ||| |||||| |   |  || || | ||| |||  |||    
T  10375723 aagatttttgtttgtgttggatgatttgtggaatgacaattattatgattggggtgaactagtaagtcccttcattgatggaaaacccggaagcatggtg 10375624  T
Q  122 ataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    || |||||||| ||| ||| |||||||||  |||| ||||||||||||||||| ||| || || ||| ||||||    
T  10375623 attataacaacgcgccaacgaaaagttgctaaggtagcatgcacatttcctatacatgaactaaaacttctatc 10375550  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 8861477 - 8861533
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatga 78  Q
    ||||||||||||||||||||| ||| | |||||||||| ||||  ||| ||||||||    
T  8861477 aagatttttgtttgtgttggatgacctatggaatgacaattataatgagtgggatga 8861533  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 10363579 - 10363503
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    ||||| |||||||| ||| || ||||||| || ||||| |||  |||||||||||| ||||||||||| | ||||||    
T  10363579 gtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagatcttctatc 10363503  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 10889497 - 10889553
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatga 78  Q
    ||||||||||||||||||||| ||| | |||||||||| ||||  ||| ||||||||    
T  10889497 aagatttttgtttgtgttggatgacctatggaatgacaattataatgattgggatga 10889553  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 11130904 - 11130848
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatga 78  Q
    ||||||||||||||||||||| ||| | |||||||||| ||||  ||| ||||||||    
T  11130904 aagatttttgtttgtgttggatgacctatggaatgacaattataatgattgggatga 11130848  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 11148732 - 11148676
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatga 78  Q
    ||||||||||||||||||||| ||| | |||||||||| ||||  ||| ||||||||    
T  11148732 aagatttttgtttgtgttggatgacttatggaatgacaattataatgattgggatga 11148676  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 11159895 - 11159839
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatga 78  Q
    ||||||||||||||||||||| ||| | |||||||||| ||||  ||| ||||||||    
T  11159895 aagatttttgtttgtgttggatgacctttggaatgacaattataatgattgggatga 11159839  T

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Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 11485215 - 11485408
Alignment:
Q  8 catttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaa 107  Q
    ||||||| |||||||||| |||||||||||||||||||||| ||||| |||| |||| |||| ||||||  |||||||||||||||||  ||  ||||||    
T  11485215 catttgaaggatagaagaattttgtttgtgttggacgacatatggaacgacaattatcttgattgggatcggttaataactcccttgattaatggagaaa 11485314  T
Q  108 caggaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatga 201  Q
    | | | |||| ||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11485315 ctgtaagcaaggtgatcataacaacacgcgaagagaaagttgcagaggtcgcatgcgcatttcctattcataaattagaacctctatctgatga 11485408  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 44957582 - 44957387
Alignment:
Q  6 aacatttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagaga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | || |||  |||||||||||| |||||||| ||| |||     
T  44957582 aacatttgatggatagaagatttttgtttgtgttggacgacatatggaatgacaattatatcgattggtctgagttaataacacccttgaccaaccgagg 44957483  T
Q  106 aacaggaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatga 201  Q
    ||| | | |||| || || ||||||||||| |||||||| ||||||||||| |||  ||||||||| |||||||||||||||||||||||||||||    
T  44957482 aactgaaagcaaggtcatcataacaacacgtgaacaaaacgttgcagaggttgcacacacatttccgattcataaattagaacctctatctgatga 44957387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 17852817 - 17852622
Alignment:
Q  6 aacatttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagaga 105  Q
    |||| |||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||| |||  |||| || |||||||||||   ||  || |    
T  17852817 aacaattgatggatagaagatttttgtttgtgttggacgacttatggaatgacaattacgttgattggagtgagctagtaactcccttgtttaagggaaa 17852718  T
Q  106 aacaggaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatga 201  Q
    | | ||| |||| || || ||||||||||||  | |||||||||| ||||| ||| |||||||||| |||||||||||||||||| |||| |||||    
T  17852717 agctggaagcaaggtcatcataacaacacgcctaaaaaaagttgcggaggttgcacgcacatttccaattcataaattagaacctatatccgatga 17852622  T

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Target: scaffold0002 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 135777 - 135585
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| ||| |||||||  |||||||||| ||||||  ||| |||||||||||| ||||||| ||||  ||| |  |||| |    
T  135777 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 135678  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  135677 gaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 135585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 145828 - 145636
Alignment:
Q  11 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgacaaacagagaaacag 110  Q
    |||| ||||| |||||||||||| ||| |||||||  |||||||||| ||||||  ||| |||||||||||| ||||||| ||||  ||| |  |||| |    
T  145828 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 145729  T
Q  111 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    || | |  ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  145728 gaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 145636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 154025 - 153941
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatg 203  Q
    ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||    
T  154025 gtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatg 153941  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 26907185 - 26907261
Alignment:
Q  119 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatc 195  Q
    ||||| |||||||| ||| ||||||||||||||||||| |||   ||||||||||| ||||||||||||||||||||    
T  26907185 gtgattataacaacgcgccaacaaaaagttgcagaggtggcacatacatttcctatacataaattagaacctctatc 26907261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 31679611 - 31679576
Alignment:
Q  22 aagatttttgtttgtgttggacgacatgtggaatga 57  Q
    ||||||||||||||||||||| ||||||||||||||    
T  31679611 aagatttttgtttgtgttggatgacatgtggaatga 31679576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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